miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 3' -50.4 NC_006560.1 + 2273 0.67 0.985821
Target:  5'- -------cGGUGCGAgugcgcCUCGCCGcgGCg -3'
miRNA:   3'- auauuucuCCACGCU------GAGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 15028 0.69 0.957666
Target:  5'- -----cGGGGUGCGGCgucggagacucgCGCCGggggGCg -3'
miRNA:   3'- auauuuCUCCACGCUGa-----------GCGGCaa--CG- -5'
31134 3' -50.4 NC_006560.1 + 17491 0.67 0.990386
Target:  5'- --gGGGGGGGUGgGGCUggagCGCgCGggGCc -3'
miRNA:   3'- auaUUUCUCCACgCUGA----GCG-GCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 18007 0.66 0.992724
Target:  5'- -cUGGAGAGG-GCGcACgCGCCGcccGCg -3'
miRNA:   3'- auAUUUCUCCaCGC-UGaGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 18482 0.67 0.985821
Target:  5'- --cGAGGAGGUcGCGGacgcCGCCGccUGCu -3'
miRNA:   3'- auaUUUCUCCA-CGCUga--GCGGCa-ACG- -5'
31134 3' -50.4 NC_006560.1 + 23554 0.66 0.992724
Target:  5'- -----cGAGGgcuucggcgGCGAcCUCGCCGccgUGCc -3'
miRNA:   3'- auauuuCUCCa--------CGCU-GAGCGGCa--ACG- -5'
31134 3' -50.4 NC_006560.1 + 31830 0.76 0.682619
Target:  5'- ----cGGGGGUGgGGCUCGCCGc-GCg -3'
miRNA:   3'- auauuUCUCCACgCUGAGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 34728 0.66 0.994584
Target:  5'- ----cGGGGGU-CG-CUCGCCGcgGCg -3'
miRNA:   3'- auauuUCUCCAcGCuGAGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 39053 0.68 0.979756
Target:  5'- --cGAAGGGGUGguGCaUCGCCGcgGCg -3'
miRNA:   3'- auaUUUCUCCACgcUG-AGCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 43716 0.67 0.989015
Target:  5'- -----cGAGcgcaGCGACUCGCCGggcGCg -3'
miRNA:   3'- auauuuCUCca--CGCUGAGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 43847 0.68 0.974758
Target:  5'- -----cGAGGgugcggGCGACgugCGCCGgcGCc -3'
miRNA:   3'- auauuuCUCCa-----CGCUGa--GCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 45772 0.68 0.971946
Target:  5'- cGUGGGGGGGcGCgGGCUcggucCGCCGggGCc -3'
miRNA:   3'- aUAUUUCUCCaCG-CUGA-----GCGGCaaCG- -5'
31134 3' -50.4 NC_006560.1 + 47629 0.67 0.983979
Target:  5'- ---cAGGAGGUG-GACgUgGCCGUUcGCg -3'
miRNA:   3'- auauUUCUCCACgCUG-AgCGGCAA-CG- -5'
31134 3' -50.4 NC_006560.1 + 57743 0.67 0.990386
Target:  5'- --gGAGGGGGgacGCGGCgCGCgCGUcgGCg -3'
miRNA:   3'- auaUUUCUCCa--CGCUGaGCG-GCAa-CG- -5'
31134 3' -50.4 NC_006560.1 + 62876 0.71 0.919505
Target:  5'- cGUGuuGGGGcgcaGCGuCUCGCCGUcGCg -3'
miRNA:   3'- aUAUuuCUCCa---CGCuGAGCGGCAaCG- -5'
31134 3' -50.4 NC_006560.1 + 62927 0.7 0.941038
Target:  5'- gGUGAAGAGGggcGCGAacccCUCGCUGacgucgGCg -3'
miRNA:   3'- aUAUUUCUCCa--CGCU----GAGCGGCaa----CG- -5'
31134 3' -50.4 NC_006560.1 + 63714 0.7 0.941038
Target:  5'- -cUGGAGAGGUGCauGC-CGCCccuGUUGCu -3'
miRNA:   3'- auAUUUCUCCACGc-UGaGCGG---CAACG- -5'
31134 3' -50.4 NC_006560.1 + 64939 0.67 0.989015
Target:  5'- --cGGGGAcGGgGgGGCUCGCCGccgGCg -3'
miRNA:   3'- auaUUUCU-CCaCgCUGAGCGGCaa-CG- -5'
31134 3' -50.4 NC_006560.1 + 65478 0.7 0.936047
Target:  5'- -----cGAGGcgcgGaCGACUCGgCGUUGCg -3'
miRNA:   3'- auauuuCUCCa---C-GCUGAGCgGCAACG- -5'
31134 3' -50.4 NC_006560.1 + 72350 0.66 0.995358
Target:  5'- ----cGGGGGUGUGGggcgcggccCUCGCgGggGCg -3'
miRNA:   3'- auauuUCUCCACGCU---------GAGCGgCaaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.