miRNA display CGI


Results 21 - 40 of 534 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31134 5' -62.9 NC_006560.1 + 31703 0.66 0.657953
Target:  5'- aCGGCcucuggaugacccCGGUGGGCGGCAUGCUCuUCg -3'
miRNA:   3'- -GCCGc------------GCCGCUCGCUGUGCGGGcAGg -5'
31134 5' -62.9 NC_006560.1 + 55261 0.66 0.652184
Target:  5'- gCGGcCGCGGaccccGCGGCgACGCCgGcCCa -3'
miRNA:   3'- -GCC-GCGCCgcu--CGCUG-UGCGGgCaGG- -5'
31134 5' -62.9 NC_006560.1 + 122553 0.66 0.652184
Target:  5'- cCGGguucuCGCGGUG-GCGACugaGCCgGUCg -3'
miRNA:   3'- -GCC-----GCGCCGCuCGCUGug-CGGgCAGg -5'
31134 5' -62.9 NC_006560.1 + 74433 0.66 0.652184
Target:  5'- aGGCGCGGgaccgccuCGGcGCGcGCGCGCgCG-CCa -3'
miRNA:   3'- gCCGCGCC--------GCU-CGC-UGUGCGgGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 52536 0.66 0.652184
Target:  5'- aGGCGgGGgcguCGAGCGGCggccucugccGCGCCa-UCCu -3'
miRNA:   3'- gCCGCgCC----GCUCGCUG----------UGCGGgcAGG- -5'
31134 5' -62.9 NC_006560.1 + 104854 0.66 0.652184
Target:  5'- uGGuCGCGGUGuguuuuauaaaaGGgGGCGCGCgCCGgCCc -3'
miRNA:   3'- gCC-GCGCCGC------------UCgCUGUGCG-GGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 134840 0.66 0.652184
Target:  5'- gGGCGUGGCccGCGAggaACGCC--UCCa -3'
miRNA:   3'- gCCGCGCCGcuCGCUg--UGCGGgcAGG- -5'
31134 5' -62.9 NC_006560.1 + 42846 0.66 0.651222
Target:  5'- gCGGgGCGGCGGGCcagccguGGgGCGUcagcagCCGcUCCg -3'
miRNA:   3'- -GCCgCGCCGCUCG-------CUgUGCG------GGC-AGG- -5'
31134 5' -62.9 NC_006560.1 + 133673 0.66 0.649297
Target:  5'- gGGCcCGGUgauGAGCGcgcccgggaugggcGCGCGCagcaCGUCCg -3'
miRNA:   3'- gCCGcGCCG---CUCGC--------------UGUGCGg---GCAGG- -5'
31134 5' -62.9 NC_006560.1 + 3260 0.66 0.649297
Target:  5'- gCGGCGCGcggcgccagccgccGCGGGgGuCGgGCCCG-CCn -3'
miRNA:   3'- -GCCGCGC--------------CGCUCgCuGUgCGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 131060 0.66 0.642558
Target:  5'- aGGuCcCGGCGGGCGcCGCcgccguGCCCG-CCg -3'
miRNA:   3'- gCC-GcGCCGCUCGCuGUG------CGGGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 2967 0.66 0.642558
Target:  5'- gCGGCGCGuaGAGCaccaGCACGCgCacUCCu -3'
miRNA:   3'- -GCCGCGCcgCUCGc---UGUGCGgGc-AGG- -5'
31134 5' -62.9 NC_006560.1 + 150131 0.66 0.642558
Target:  5'- cCGGCGgccucagcuucCGGCGGGCG-CGCGCgacaCGgaaggCCg -3'
miRNA:   3'- -GCCGC-----------GCCGCUCGCuGUGCGg---GCa----GG- -5'
31134 5' -62.9 NC_006560.1 + 102588 0.66 0.642558
Target:  5'- cCGGCGCcGCgccucGAGaaCGGC-CGCCCGcUCCu -3'
miRNA:   3'- -GCCGCGcCG-----CUC--GCUGuGCGGGC-AGG- -5'
31134 5' -62.9 NC_006560.1 + 139322 0.66 0.642558
Target:  5'- gGGCGCGG-GAGaGGCggGCGCCuCGgcggCCc -3'
miRNA:   3'- gCCGCGCCgCUCgCUG--UGCGG-GCa---GG- -5'
31134 5' -62.9 NC_006560.1 + 22962 0.66 0.642558
Target:  5'- gGGCGCccgaGCuGGGCGACGcCGCgCG-CCa -3'
miRNA:   3'- gCCGCGc---CG-CUCGCUGU-GCGgGCaGG- -5'
31134 5' -62.9 NC_006560.1 + 134009 0.66 0.642558
Target:  5'- gCGGCgcgcugcucGCGGuCGAGCGccccccgccggGCGCGCCUGagCu -3'
miRNA:   3'- -GCCG---------CGCC-GCUCGC-----------UGUGCGGGCagG- -5'
31134 5' -62.9 NC_006560.1 + 129025 0.66 0.642558
Target:  5'- -uGCGCGGCGcGCaccuGgACGCCC-UCCg -3'
miRNA:   3'- gcCGCGCCGCuCGc---UgUGCGGGcAGG- -5'
31134 5' -62.9 NC_006560.1 + 77711 0.66 0.642558
Target:  5'- gCGGaGcCGGCGGGCGcCcgGCGCCCG-Cg -3'
miRNA:   3'- -GCCgC-GCCGCUCGCuG--UGCGGGCaGg -5'
31134 5' -62.9 NC_006560.1 + 74309 0.66 0.642558
Target:  5'- gCGGC-CGGCGGG-GACgACGCcgCCG-CCg -3'
miRNA:   3'- -GCCGcGCCGCUCgCUG-UGCG--GGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.