miRNA display CGI


Results 1 - 20 of 88 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31139 3' -56.8 NC_006560.1 + 3993 0.66 0.880465
Target:  5'- aCGCCCGCGgcgccguagccGG-CGAGgccGGGGgcGGCGg -3'
miRNA:   3'- aGUGGGUGC-----------UCaGCUU---CCCCauCCGU- -5'
31139 3' -56.8 NC_006560.1 + 5099 0.71 0.594033
Target:  5'- cCGCCCG-GGGUCGgcGGGGgcgcGGCGu -3'
miRNA:   3'- aGUGGGUgCUCAGCuuCCCCau--CCGU- -5'
31139 3' -56.8 NC_006560.1 + 5666 0.67 0.842747
Target:  5'- cCGCCC-CGGGgcgCGggGGcGGccGGCGg -3'
miRNA:   3'- aGUGGGuGCUCa--GCuuCC-CCauCCGU- -5'
31139 3' -56.8 NC_006560.1 + 6535 0.66 0.894063
Target:  5'- aUCGCCuCGgGGGcUCGggGGGacggGGGCu -3'
miRNA:   3'- -AGUGG-GUgCUC-AGCuuCCCca--UCCGu -5'
31139 3' -56.8 NC_006560.1 + 9043 0.66 0.880465
Target:  5'- gUCACCagguaCACGGgggcGUCGAccgccuccAGGGGgagGGGCGg -3'
miRNA:   3'- -AGUGG-----GUGCU----CAGCU--------UCCCCa--UCCGU- -5'
31139 3' -56.8 NC_006560.1 + 9622 0.73 0.524248
Target:  5'- --cCCCugGGGccgcgcCGAAGGGGUGGGUg -3'
miRNA:   3'- aguGGGugCUCa-----GCUUCCCCAUCCGu -5'
31139 3' -56.8 NC_006560.1 + 10196 0.66 0.890077
Target:  5'- cCACCUcgGCGAugggGUgGGgguggggguagggguAGGGGUGGGCGg -3'
miRNA:   3'- aGUGGG--UGCU----CAgCU---------------UCCCCAUCCGU- -5'
31139 3' -56.8 NC_006560.1 + 12698 0.72 0.543923
Target:  5'- gCGCCCGUGuGGUCGgcGGGGguggGGGCGg -3'
miRNA:   3'- aGUGGGUGC-UCAGCuuCCCCa---UCCGU- -5'
31139 3' -56.8 NC_006560.1 + 15020 0.67 0.8178
Target:  5'- cUCGCCCGCGGggugcggcGUCGGAGacucgcgccGGG-GGGCGa -3'
miRNA:   3'- -AGUGGGUGCU--------CAGCUUC---------CCCaUCCGU- -5'
31139 3' -56.8 NC_006560.1 + 16221 0.7 0.665118
Target:  5'- -gGCCCGCGGgcccggcaucGUCGAggcgGGGGGU-GGCGu -3'
miRNA:   3'- agUGGGUGCU----------CAGCU----UCCCCAuCCGU- -5'
31139 3' -56.8 NC_006560.1 + 16362 0.69 0.744567
Target:  5'- aCGgCCACgGAG-CGAGGGGGggcauGGCGg -3'
miRNA:   3'- aGUgGGUG-CUCaGCUUCCCCau---CCGU- -5'
31139 3' -56.8 NC_006560.1 + 17469 0.66 0.880465
Target:  5'- gCACCUcCGGGgugaguccgcCGggGGGGgugGGGCu -3'
miRNA:   3'- aGUGGGuGCUCa---------GCuuCCCCa--UCCGu -5'
31139 3' -56.8 NC_006560.1 + 20876 0.7 0.644819
Target:  5'- cUCACCUGCGAgguuccGUCGGcgcggcguucccGGGcGGUGGGCGc -3'
miRNA:   3'- -AGUGGGUGCU------CAGCU------------UCC-CCAUCCGU- -5'
31139 3' -56.8 NC_006560.1 + 26489 0.66 0.894063
Target:  5'- -gGCCCcgGCGGGgggcgggcgcgCGAGGGGGcggGGGCc -3'
miRNA:   3'- agUGGG--UGCUCa----------GCUUCCCCa--UCCGu -5'
31139 3' -56.8 NC_006560.1 + 26617 0.69 0.744567
Target:  5'- cCGCgCCGCGGGg-GggGGGGacgGGGCc -3'
miRNA:   3'- aGUG-GGUGCUCagCuuCCCCa--UCCGu -5'
31139 3' -56.8 NC_006560.1 + 26964 0.69 0.725108
Target:  5'- -aACCCcacagGCGGGgCGggGGGGggcGGGCGc -3'
miRNA:   3'- agUGGG-----UGCUCaGCuuCCCCa--UCCGU- -5'
31139 3' -56.8 NC_006560.1 + 27897 0.66 0.865995
Target:  5'- cCGCCCccccuuGCGcacGUCGGaccGGGGGuUAGGCGu -3'
miRNA:   3'- aGUGGG------UGCu--CAGCU---UCCCC-AUCCGU- -5'
31139 3' -56.8 NC_006560.1 + 28424 0.69 0.725108
Target:  5'- -gGCCgggGCGGGcCGAGGGGG-AGGCGc -3'
miRNA:   3'- agUGGg--UGCUCaGCUUCCCCaUCCGU- -5'
31139 3' -56.8 NC_006560.1 + 29469 0.67 0.83461
Target:  5'- cCGCCguCGAGggggaggGAGGGGGgaagGGGCGc -3'
miRNA:   3'- aGUGGguGCUCag-----CUUCCCCa---UCCGU- -5'
31139 3' -56.8 NC_006560.1 + 30507 0.69 0.754155
Target:  5'- gCGCCUccgGCGGGg-GAGGGGGaggGGGCGg -3'
miRNA:   3'- aGUGGG---UGCUCagCUUCCCCa--UCCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.