miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31139 5' -61.5 NC_006560.1 + 79143 0.66 0.68165
Target:  5'- ---cUCCCcCCAGCgGCccccCCGGCCGCg -3'
miRNA:   3'- gcacAGGGuGGUCG-CGa---GGUCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 35437 0.66 0.68165
Target:  5'- ---aUCCCgguuGCCGGgGCgaCCGGCCGCg -3'
miRNA:   3'- gcacAGGG----UGGUCgCGa-GGUCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 40815 0.66 0.68165
Target:  5'- gCGUGUCCCA-CAGgGCcgCCAGgcaguugaCCGCc -3'
miRNA:   3'- -GCACAGGGUgGUCgCGa-GGUC--------GGCGa -5'
31139 5' -61.5 NC_006560.1 + 38938 0.66 0.677717
Target:  5'- cCGUG-CgCCGCCAGCGuCUCCcaggagacccggcGCUGCUc -3'
miRNA:   3'- -GCACaG-GGUGGUCGC-GAGGu------------CGGCGA- -5'
31139 5' -61.5 NC_006560.1 + 24401 0.66 0.671807
Target:  5'- aCGUGcgCgUGCUGGUGCUCUAcgcGCCGCUg -3'
miRNA:   3'- -GCACa-GgGUGGUCGCGAGGU---CGGCGA- -5'
31139 5' -61.5 NC_006560.1 + 91345 0.66 0.671807
Target:  5'- aCGUGgaCCCGgCGGUGC-CCAcGUCGCUg -3'
miRNA:   3'- -GCACa-GGGUgGUCGCGaGGU-CGGCGA- -5'
31139 5' -61.5 NC_006560.1 + 104155 0.66 0.671807
Target:  5'- --cGUCgCGCCGcuccuGUGCuaUCCGGCCGCg -3'
miRNA:   3'- gcaCAGgGUGGU-----CGCG--AGGUCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 29208 0.66 0.671807
Target:  5'- --cGUCCCGCCGggaggccuccGCGCUCUcccuCCGCUc -3'
miRNA:   3'- gcaCAGGGUGGU----------CGCGAGGuc--GGCGA- -5'
31139 5' -61.5 NC_006560.1 + 95351 0.66 0.670821
Target:  5'- gGUGUucgacgCCCACCGGUucaugcgcgcuucGCUCCuGCgGCa -3'
miRNA:   3'- gCACA------GGGUGGUCG-------------CGAGGuCGgCGa -5'
31139 5' -61.5 NC_006560.1 + 48813 0.66 0.661933
Target:  5'- aGg--CgCGCCAGCugucgugccuGUUCCAGCCGCUc -3'
miRNA:   3'- gCacaGgGUGGUCG----------CGAGGUCGGCGA- -5'
31139 5' -61.5 NC_006560.1 + 150511 0.66 0.661933
Target:  5'- cCG-GcCCCGCCGGCGUuuuuuUCCGcgcgcgcgccGCCGCg -3'
miRNA:   3'- -GCaCaGGGUGGUCGCG-----AGGU----------CGGCGa -5'
31139 5' -61.5 NC_006560.1 + 182 0.66 0.661933
Target:  5'- cCG-GcCCCGCCGGCGUuuuuuUCCGcgcgcgcgccGCCGCg -3'
miRNA:   3'- -GCaCaGGGUGGUCGCG-----AGGU----------CGGCGa -5'
31139 5' -61.5 NC_006560.1 + 86882 0.66 0.661933
Target:  5'- ----cCCCGCCGGCGgucgcgucCUCCGGgCCGCc -3'
miRNA:   3'- gcacaGGGUGGUCGC--------GAGGUC-GGCGa -5'
31139 5' -61.5 NC_006560.1 + 60934 0.66 0.661933
Target:  5'- aCGUGcgCCggcgccgcCGCCAcGUGCUCCAcgacGCCGCg -3'
miRNA:   3'- -GCACa-GG--------GUGGU-CGCGAGGU----CGGCGa -5'
31139 5' -61.5 NC_006560.1 + 67319 0.66 0.661933
Target:  5'- -cUG-CCCACCgcccggGGCGCUCCGGagauCGCg -3'
miRNA:   3'- gcACaGGGUGG------UCGCGAGGUCg---GCGa -5'
31139 5' -61.5 NC_006560.1 + 102900 0.66 0.661933
Target:  5'- gCGUGgCUCuCCGGCGCUCCucGCCcucGCg -3'
miRNA:   3'- -GCACaGGGuGGUCGCGAGGu-CGG---CGa -5'
31139 5' -61.5 NC_006560.1 + 17781 0.66 0.661933
Target:  5'- uCGUcGUCCgCucgaCGGC-CUCCGGCCGCc -3'
miRNA:   3'- -GCA-CAGG-Gug--GUCGcGAGGUCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 16418 0.66 0.652037
Target:  5'- gGUGccgCCCGCCcGCGCcggcUCCcuuuuguacggGGCCGCg -3'
miRNA:   3'- gCACa--GGGUGGuCGCG----AGG-----------UCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 64970 0.66 0.652037
Target:  5'- --cGUCCCcCuCGGCGgggCCGGCCGCc -3'
miRNA:   3'- gcaCAGGGuG-GUCGCga-GGUCGGCGa -5'
31139 5' -61.5 NC_006560.1 + 77931 0.66 0.652037
Target:  5'- gCGcGUCCUGCCcGCGgUCCcggccgGGCCGCc -3'
miRNA:   3'- -GCaCAGGGUGGuCGCgAGG------UCGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.