miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31140 3' -54.9 NC_006560.1 + 140714 0.65 0.955461
Target:  5'- cCCGGgAGUCG-CCGUCucgagggcguuauCCGGaaacaGGGCg -3'
miRNA:   3'- -GGCUgUCAGCuGGUAGu------------GGUCg----UCCG- -5'
31140 3' -54.9 NC_006560.1 + 107842 0.66 0.954687
Target:  5'- -aGGCGGUucacgucuuccaCGGCCAgCACCAGggaggucacgcccguCAGGCg -3'
miRNA:   3'- ggCUGUCA------------GCUGGUaGUGGUC---------------GUCCG- -5'
31140 3' -54.9 NC_006560.1 + 86291 0.66 0.954687
Target:  5'- uCCGGgaAGUCGGCCcggaggcgcucgaagGUCGCCcAGCGcGCg -3'
miRNA:   3'- -GGCUg-UCAGCUGG---------------UAGUGG-UCGUcCG- -5'
31140 3' -54.9 NC_006560.1 + 2959 0.66 0.953113
Target:  5'- gCCgGGCAG-CGGCgCGUagagCACCAGCAcGCg -3'
miRNA:   3'- -GG-CUGUCaGCUG-GUA----GUGGUCGUcCG- -5'
31140 3' -54.9 NC_006560.1 + 64436 0.66 0.953113
Target:  5'- uCCaGGCcGUCGAagaagggCACCAGCuGGCu -3'
miRNA:   3'- -GG-CUGuCAGCUggua---GUGGUCGuCCG- -5'
31140 3' -54.9 NC_006560.1 + 137625 0.66 0.953113
Target:  5'- gCCGGCGGcacgCGGCCGcgggGCUGGCGGaGCu -3'
miRNA:   3'- -GGCUGUCa---GCUGGUag--UGGUCGUC-CG- -5'
31140 3' -54.9 NC_006560.1 + 81352 0.66 0.953113
Target:  5'- -gGACgaGGcCGGCgGcCACCAGCAGcGCg -3'
miRNA:   3'- ggCUG--UCaGCUGgUaGUGGUCGUC-CG- -5'
31140 3' -54.9 NC_006560.1 + 127086 0.66 0.953113
Target:  5'- -gGACGGU-GACCugcagcaGCCagaGGCAGGCg -3'
miRNA:   3'- ggCUGUCAgCUGGuag----UGG---UCGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 52246 0.66 0.953113
Target:  5'- cCCGGCcGgcgCGGCgCAcCGCCccgauGCGGGCg -3'
miRNA:   3'- -GGCUGuCa--GCUG-GUaGUGGu----CGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 75181 0.66 0.953113
Target:  5'- gCCGAgGG-CGACCG-CGCCGcGCugcuggAGGCc -3'
miRNA:   3'- -GGCUgUCaGCUGGUaGUGGU-CG------UCCG- -5'
31140 3' -54.9 NC_006560.1 + 6305 0.66 0.953113
Target:  5'- aCGAUccugcguugcuAGgCGACCGgggaCGCCGcGCGGGCg -3'
miRNA:   3'- gGCUG-----------UCaGCUGGUa---GUGGU-CGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 79281 0.66 0.953113
Target:  5'- cCCGGCGa-CGACUccggGUCGCCGcCGGGCc -3'
miRNA:   3'- -GGCUGUcaGCUGG----UAGUGGUcGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 59460 0.66 0.949018
Target:  5'- -gGGCGGgCGGCCG--GCCGaacGCGGGCg -3'
miRNA:   3'- ggCUGUCaGCUGGUagUGGU---CGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 69877 0.66 0.949018
Target:  5'- cCCGcuCGGUCG-CguUCGCCcuGCGGGUg -3'
miRNA:   3'- -GGCu-GUCAGCuGguAGUGGu-CGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 81288 0.66 0.949018
Target:  5'- cCCGGCGGcCgGGCCGcCGCCuuuuauCGGGCg -3'
miRNA:   3'- -GGCUGUCaG-CUGGUaGUGGuc----GUCCG- -5'
31140 3' -54.9 NC_006560.1 + 111513 0.66 0.949018
Target:  5'- cCCGGCucaCGcacGCCGaCACCcGCGGGCg -3'
miRNA:   3'- -GGCUGucaGC---UGGUaGUGGuCGUCCG- -5'
31140 3' -54.9 NC_006560.1 + 31183 0.66 0.949018
Target:  5'- cCCGACGcGcCGGCCcgC-CCGGCGcagcuccccccGGCa -3'
miRNA:   3'- -GGCUGU-CaGCUGGuaGuGGUCGU-----------CCG- -5'
31140 3' -54.9 NC_006560.1 + 124813 0.66 0.949018
Target:  5'- cCCGGCGacgCGcCCGUCGCgGGCGuGCa -3'
miRNA:   3'- -GGCUGUca-GCuGGUAGUGgUCGUcCG- -5'
31140 3' -54.9 NC_006560.1 + 14843 0.66 0.949018
Target:  5'- gCGGCGGggggagcguggCGGCCGggCGCCGGgGGGg -3'
miRNA:   3'- gGCUGUCa----------GCUGGUa-GUGGUCgUCCg -5'
31140 3' -54.9 NC_006560.1 + 40318 0.66 0.949018
Target:  5'- -gGGCGGgcgCGGCCccuUCuCCGGCccGGGCg -3'
miRNA:   3'- ggCUGUCa--GCUGGu--AGuGGUCG--UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.