miRNA display CGI


Results 1 - 20 of 477 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31140 5' -64.1 NC_006560.1 + 119068 0.66 0.605072
Target:  5'- uCUuCCGGACGGCGuacGCGGCggccguccugucguuCCUGgGCGa -3'
miRNA:   3'- -GAcGGCCUGCUGC---UGCCG---------------GGGCgCGC- -5'
31140 5' -64.1 NC_006560.1 + 84698 0.66 0.601253
Target:  5'- -gGCgCGGGCGACGGgcGCCUCgGCGCc -3'
miRNA:   3'- gaCG-GCCUGCUGCUgcCGGGG-CGCGc -5'
31140 5' -64.1 NC_006560.1 + 39314 0.66 0.601253
Target:  5'- -gGCCGGGCGG-GGCGGUggggcggggccgCCCGCccucGCGc -3'
miRNA:   3'- gaCGGCCUGCUgCUGCCG------------GGGCG----CGC- -5'
31140 5' -64.1 NC_006560.1 + 74311 0.66 0.601253
Target:  5'- -gGCCGG-CGGgGACGacGCCgCCGCcgGCGg -3'
miRNA:   3'- gaCGGCCuGCUgCUGC--CGG-GGCG--CGC- -5'
31140 5' -64.1 NC_006560.1 + 27765 0.66 0.601253
Target:  5'- -aGCCGGGauCGAguGCGGCCaCCGaCGCc -3'
miRNA:   3'- gaCGGCCU--GCUgcUGCCGG-GGC-GCGc -5'
31140 5' -64.1 NC_006560.1 + 111962 0.66 0.601253
Target:  5'- -cGCUGGA--GCGcuuuGCGGCCCaCGCGgGg -3'
miRNA:   3'- gaCGGCCUgcUGC----UGCCGGG-GCGCgC- -5'
31140 5' -64.1 NC_006560.1 + 104752 0.66 0.601253
Target:  5'- -cGcCCGGGaGAUGGCccccGCCCCGgGCGg -3'
miRNA:   3'- gaC-GGCCUgCUGCUGc---CGGGGCgCGC- -5'
31140 5' -64.1 NC_006560.1 + 1334 0.66 0.601253
Target:  5'- --cCCGGGCGccCGACGGgaCCGUGCGc -3'
miRNA:   3'- gacGGCCUGCu-GCUGCCggGGCGCGC- -5'
31140 5' -64.1 NC_006560.1 + 25255 0.66 0.600298
Target:  5'- -aGCCGGAcccCGACGcCGcGCCgcucgugCUGCGCGc -3'
miRNA:   3'- gaCGGCCU---GCUGCuGC-CGG-------GGCGCGC- -5'
31140 5' -64.1 NC_006560.1 + 35175 0.66 0.600298
Target:  5'- -cGCCGGGCc-CGG-GGCCCCGCcccggggGCGc -3'
miRNA:   3'- gaCGGCCUGcuGCUgCCGGGGCG-------CGC- -5'
31140 5' -64.1 NC_006560.1 + 81224 0.66 0.597436
Target:  5'- -aGgaGGACGGCGGCGGaggggggcgagaCCGCGCa -3'
miRNA:   3'- gaCggCCUGCUGCUGCCgg----------GGCGCGc -5'
31140 5' -64.1 NC_006560.1 + 142179 0.66 0.591719
Target:  5'- -cGCgCGGGCccuaaugggaGGCG-CGGCCuCCGgGCGg -3'
miRNA:   3'- gaCG-GCCUG----------CUGCuGCCGG-GGCgCGC- -5'
31140 5' -64.1 NC_006560.1 + 150275 0.66 0.591719
Target:  5'- -cG-CGGACG-CGAaacgccggaGGCCCgCGCGCGc -3'
miRNA:   3'- gaCgGCCUGCuGCUg--------CCGGG-GCGCGC- -5'
31140 5' -64.1 NC_006560.1 + 76265 0.66 0.591719
Target:  5'- -gGCCacGGACcgcguGACGGCcGCCCUGCGgGa -3'
miRNA:   3'- gaCGG--CCUG-----CUGCUGcCGGGGCGCgC- -5'
31140 5' -64.1 NC_006560.1 + 147998 0.66 0.591719
Target:  5'- -gGCgGGGCGGuCG-CGGCCCC-CGUc -3'
miRNA:   3'- gaCGgCCUGCU-GCuGCCGGGGcGCGc -5'
31140 5' -64.1 NC_006560.1 + 35280 0.66 0.591719
Target:  5'- --nCCGGGCGGCGG-GGCCCgggguccggggGCGCGg -3'
miRNA:   3'- gacGGCCUGCUGCUgCCGGGg----------CGCGC- -5'
31140 5' -64.1 NC_006560.1 + 123436 0.66 0.591719
Target:  5'- -gGCCGGccccugggccACGACuGCGGCCUgGcCGUGg -3'
miRNA:   3'- gaCGGCC----------UGCUGcUGCCGGGgC-GCGC- -5'
31140 5' -64.1 NC_006560.1 + 53763 0.66 0.591719
Target:  5'- gCUGCgGGGCGGCccguCGGUCgCgGCGCc -3'
miRNA:   3'- -GACGgCCUGCUGcu--GCCGG-GgCGCGc -5'
31140 5' -64.1 NC_006560.1 + 123782 0.66 0.591719
Target:  5'- gCUGCUGGcguCGGUGAcCGuGCCCCGCGa- -3'
miRNA:   3'- -GACGGCCu--GCUGCU-GC-CGGGGCGCgc -5'
31140 5' -64.1 NC_006560.1 + 77524 0.66 0.591719
Target:  5'- -cGCCcaGGGCGACGGCuuccGGCUCUucggGCGCu -3'
miRNA:   3'- gaCGG--CCUGCUGCUG----CCGGGG----CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.