miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31141 5' -63.4 NC_006560.1 + 70722 0.66 0.581471
Target:  5'- cGGCgCGUGGCCgAGUUCguCCGgGagCUCCAc -3'
miRNA:   3'- -CCG-GUACCGG-UCGAG--GGCgCg-GAGGU- -5'
31141 5' -63.4 NC_006560.1 + 23232 0.66 0.581471
Target:  5'- uGGCCAUGaGCCGccGCUacgaCCGCGCgcagaagggcUUCCu -3'
miRNA:   3'- -CCGGUAC-CGGU--CGAg---GGCGCG----------GAGGu -5'
31141 5' -63.4 NC_006560.1 + 66709 0.66 0.581471
Target:  5'- cGGCCcgggggGGCguGCUgCCGgGCCagggCCGg -3'
miRNA:   3'- -CCGGua----CCGguCGAgGGCgCGGa---GGU- -5'
31141 5' -63.4 NC_006560.1 + 118044 0.66 0.581471
Target:  5'- cGGCgGgGGCgGGC-CCgGCGCCgCCGc -3'
miRNA:   3'- -CCGgUaCCGgUCGaGGgCGCGGaGGU- -5'
31141 5' -63.4 NC_006560.1 + 72315 0.66 0.581471
Target:  5'- cGCCccGGCggauccggGGCcCgCCGCGCCUCCGu -3'
miRNA:   3'- cCGGuaCCGg-------UCGaG-GGCGCGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 27395 0.66 0.581471
Target:  5'- gGGCCG-GGCCcucccgcggcGGCgcgcgCgCGgGCCUCCGg -3'
miRNA:   3'- -CCGGUaCCGG----------UCGa----GgGCgCGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 142898 0.66 0.581471
Target:  5'- uGGCCccGGCCGcgccGCggaacCCCGCaGCCcCCGa -3'
miRNA:   3'- -CCGGuaCCGGU----CGa----GGGCG-CGGaGGU- -5'
31141 5' -63.4 NC_006560.1 + 138042 0.66 0.580498
Target:  5'- aGGa---GGcCCGGCUCCUcgguacgcgaugaGCGCCUCCGc -3'
miRNA:   3'- -CCgguaCC-GGUCGAGGG-------------CGCGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 51358 0.66 0.579526
Target:  5'- aGGCCuucgggacggaGGCCGGC-CgCCGCGCgCUCg- -3'
miRNA:   3'- -CCGGua---------CCGGUCGaG-GGCGCG-GAGgu -5'
31141 5' -63.4 NC_006560.1 + 27088 0.66 0.572729
Target:  5'- cGGCCuggggaccgaagcgGGCCucGCgaCCCG-GCCUCCAc -3'
miRNA:   3'- -CCGGua------------CCGGu-CGa-GGGCgCGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 79518 0.66 0.571759
Target:  5'- cGGCCcaccGUCGGCUCCCuCGCCagCCu -3'
miRNA:   3'- -CCGGuac-CGGUCGAGGGcGCGGa-GGu -5'
31141 5' -63.4 NC_006560.1 + 29779 0.66 0.571759
Target:  5'- gGGCCGcgGGCCcccuCUCCCcCGCCcCCGc -3'
miRNA:   3'- -CCGGUa-CCGGuc--GAGGGcGCGGaGGU- -5'
31141 5' -63.4 NC_006560.1 + 40102 0.66 0.571759
Target:  5'- cGCCcgGGCCgccgGGCggagaCUCGCGUCgUCCAu -3'
miRNA:   3'- cCGGuaCCGG----UCGa----GGGCGCGG-AGGU- -5'
31141 5' -63.4 NC_006560.1 + 89381 0.66 0.571759
Target:  5'- cGCCAUcuccGGUCcGCUCCC-CGCC-CCGc -3'
miRNA:   3'- cCGGUA----CCGGuCGAGGGcGCGGaGGU- -5'
31141 5' -63.4 NC_006560.1 + 81681 0.66 0.571759
Target:  5'- gGGUCGaGGCCGa--CCCGCGCCUUg- -3'
miRNA:   3'- -CCGGUaCCGGUcgaGGGCGCGGAGgu -5'
31141 5' -63.4 NC_006560.1 + 106252 0.66 0.571759
Target:  5'- cGCCcgGGCCcgcggcauGCUCCgGC-UCUCCGa -3'
miRNA:   3'- cCGGuaCCGGu-------CGAGGgCGcGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 67998 0.66 0.571759
Target:  5'- cGCCGUcgGGCgAcGCccccCCCGgGCCUCCGc -3'
miRNA:   3'- cCGGUA--CCGgU-CGa---GGGCgCGGAGGU- -5'
31141 5' -63.4 NC_006560.1 + 32148 0.66 0.571759
Target:  5'- cGGCCGggcggGGCCgGGCgUCCCcgGCGCCg--- -3'
miRNA:   3'- -CCGGUa----CCGG-UCG-AGGG--CGCGGaggu -5'
31141 5' -63.4 NC_006560.1 + 93871 0.66 0.571759
Target:  5'- cGCCcggGGCUGGCggcgcaggCCCGgGCCUUCc -3'
miRNA:   3'- cCGGua-CCGGUCGa-------GGGCgCGGAGGu -5'
31141 5' -63.4 NC_006560.1 + 128750 0.66 0.568853
Target:  5'- cGGCCGcUGGCCcgcccaguucucggAGgUCaCCG-GCCUCCu -3'
miRNA:   3'- -CCGGU-ACCGG--------------UCgAG-GGCgCGGAGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.