miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31143 3' -54.8 NC_006560.1 + 143920 0.66 0.954546
Target:  5'- aCUUCGcGCGCCccacggCCCCGcgaGGCgacCCg -3'
miRNA:   3'- -GAAGCuUGCGGa-----GGGGCuugUCGa--GG- -5'
31143 3' -54.8 NC_006560.1 + 36863 0.66 0.954546
Target:  5'- gUUCGAGCGUC-CCgCCGcgccCAGCgCCg -3'
miRNA:   3'- gAAGCUUGCGGaGG-GGCuu--GUCGaGG- -5'
31143 3' -54.8 NC_006560.1 + 144462 0.66 0.954546
Target:  5'- -cUCGcGCGCCuUCCCCGu-CuGC-CCg -3'
miRNA:   3'- gaAGCuUGCGG-AGGGGCuuGuCGaGG- -5'
31143 3' -54.8 NC_006560.1 + 125284 0.66 0.950523
Target:  5'- --cCGGAgcggcgcacCGUCUCCCCGcucgucuGgAGCUCCg -3'
miRNA:   3'- gaaGCUU---------GCGGAGGGGCu------UgUCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 109412 0.66 0.950523
Target:  5'- -cUCcu-CGCCUCCCUGu---GCUCCc -3'
miRNA:   3'- gaAGcuuGCGGAGGGGCuuguCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 92601 0.66 0.950523
Target:  5'- ---aGAACGCCUgCCCGcu--GCUCa -3'
miRNA:   3'- gaagCUUGCGGAgGGGCuuguCGAGg -5'
31143 3' -54.8 NC_006560.1 + 129039 0.66 0.950523
Target:  5'- --cUGGACGCC-CUCCGGgcccaGCGGCcccUCCg -3'
miRNA:   3'- gaaGCUUGCGGaGGGGCU-----UGUCG---AGG- -5'
31143 3' -54.8 NC_006560.1 + 120435 0.66 0.949271
Target:  5'- gUUCGcGCGCC-CCgUCGAGgccguggugcugcuCGGCUCCa -3'
miRNA:   3'- gAAGCuUGCGGaGG-GGCUU--------------GUCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 60981 0.66 0.947998
Target:  5'- --gUGGACuGgCUCCCCGAGCcgaugaccgucaccgAGCUCg -3'
miRNA:   3'- gaaGCUUG-CgGAGGGGCUUG---------------UCGAGg -5'
31143 3' -54.8 NC_006560.1 + 49795 0.66 0.946268
Target:  5'- gCUUCGGGCGCUUCCgUc-GCGGUcCCg -3'
miRNA:   3'- -GAAGCUUGCGGAGGgGcuUGUCGaGG- -5'
31143 3' -54.8 NC_006560.1 + 104456 0.66 0.946268
Target:  5'- -gUCGAGuccCGCCggCCCGAGCGGaucaugCCg -3'
miRNA:   3'- gaAGCUU---GCGGagGGGCUUGUCga----GG- -5'
31143 3' -54.8 NC_006560.1 + 22044 0.66 0.946268
Target:  5'- ---aGGACGCCggaCCCgGAGgGGCcgCCg -3'
miRNA:   3'- gaagCUUGCGGa--GGGgCUUgUCGa-GG- -5'
31143 3' -54.8 NC_006560.1 + 114915 0.66 0.946268
Target:  5'- --gCGcGCGCggCCCCaGAGCGGCcCCg -3'
miRNA:   3'- gaaGCuUGCGgaGGGG-CUUGUCGaGG- -5'
31143 3' -54.8 NC_006560.1 + 143246 0.66 0.946268
Target:  5'- --gCGAACGCC-CCCCGcGACcaccGCcgCCg -3'
miRNA:   3'- gaaGCUUGCGGaGGGGC-UUGu---CGa-GG- -5'
31143 3' -54.8 NC_006560.1 + 30850 0.66 0.946268
Target:  5'- --cCGGGCGCCgccccgCCCCGcgccgccGCAGCacgCCc -3'
miRNA:   3'- gaaGCUUGCGGa-----GGGGCu------UGUCGa--GG- -5'
31143 3' -54.8 NC_006560.1 + 17942 0.66 0.946268
Target:  5'- ---aGGAgGCCUCCcguCCGG--AGCUCCg -3'
miRNA:   3'- gaagCUUgCGGAGG---GGCUugUCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 51645 0.66 0.944501
Target:  5'- --gUGGGCGCCUacaCCCCGcugcgguacgcguGCGuGCUCCg -3'
miRNA:   3'- gaaGCUUGCGGA---GGGGCu------------UGU-CGAGG- -5'
31143 3' -54.8 NC_006560.1 + 84087 0.66 0.943603
Target:  5'- gUUCGGGCaCCcCCCCGccggcgacggggaggAGCuGCUCCu -3'
miRNA:   3'- gAAGCUUGcGGaGGGGC---------------UUGuCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 119393 0.66 0.94178
Target:  5'- --cCGGcugcACGCCcucguggucuUCCCCG-GCGGCUUCg -3'
miRNA:   3'- gaaGCU----UGCGG----------AGGGGCuUGUCGAGG- -5'
31143 3' -54.8 NC_006560.1 + 145172 0.66 0.94178
Target:  5'- -cUCcc-CGCCUCCCUGGGgGGCgCCc -3'
miRNA:   3'- gaAGcuuGCGGAGGGGCUUgUCGaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.