miRNA display CGI


Results 1 - 20 of 131 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31143 5' -61.1 NC_006560.1 + 83202 0.66 0.69683
Target:  5'- -cGGgGCUGCCCGGGGcgccccccccgaagcGGGCgGCGCc -3'
miRNA:   3'- caCCaUGGCGGGCUCCu--------------UCCG-CGCGa -5'
31143 5' -61.1 NC_006560.1 + 135145 0.66 0.695852
Target:  5'- -cGGUGCCaGUCCGccuccAGGucccGGUGCGCg -3'
miRNA:   3'- caCCAUGG-CGGGC-----UCCuu--CCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 55457 0.66 0.695852
Target:  5'- -cGGgg-CGCCCGGGGcAGGGCcCGCc -3'
miRNA:   3'- caCCaugGCGGGCUCC-UUCCGcGCGa -5'
31143 5' -61.1 NC_006560.1 + 110369 0.66 0.695852
Target:  5'- cGUGG--CCGCC--GGGcAGGCGCGCc -3'
miRNA:   3'- -CACCauGGCGGgcUCCuUCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 2273 0.66 0.695852
Target:  5'- -cGGUGCgagugcgccuCGCCgCGGcGGAagucGGGCGCGCc -3'
miRNA:   3'- caCCAUG----------GCGG-GCU-CCU----UCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 87700 0.66 0.686047
Target:  5'- -aGGUccuccgcguugGCgGCCaCGGGGAAGGCG-GCc -3'
miRNA:   3'- caCCA-----------UGgCGG-GCUCCUUCCGCgCGa -5'
31143 5' -61.1 NC_006560.1 + 50472 0.66 0.686047
Target:  5'- -gGGUcGCCuGCCgCGGGaGGAGGCucugGCGCUg -3'
miRNA:   3'- caCCA-UGG-CGG-GCUC-CUUCCG----CGCGA- -5'
31143 5' -61.1 NC_006560.1 + 27271 0.66 0.686047
Target:  5'- -cGGccGCgGCCgCGGGGgcGGgGCGCg -3'
miRNA:   3'- caCCa-UGgCGG-GCUCCuuCCgCGCGa -5'
31143 5' -61.1 NC_006560.1 + 140384 0.66 0.686047
Target:  5'- -aGGU-CCGgucgucCCCGGGGggGGUucaGCGCc -3'
miRNA:   3'- caCCAuGGC------GGGCUCCuuCCG---CGCGa -5'
31143 5' -61.1 NC_006560.1 + 52739 0.66 0.686047
Target:  5'- -aGGUacGCCGCCgCGGuGGuGGGCcuGCGCg -3'
miRNA:   3'- caCCA--UGGCGG-GCU-CCuUCCG--CGCGa -5'
31143 5' -61.1 NC_006560.1 + 119786 0.66 0.686047
Target:  5'- -cGGUGCCcccGCCCGAcccccGGcGGGCGCuGUUc -3'
miRNA:   3'- caCCAUGG---CGGGCU-----CCuUCCGCG-CGA- -5'
31143 5' -61.1 NC_006560.1 + 81936 0.66 0.686047
Target:  5'- --cGUuCUGCCCGuuaaacuGGAAGGCGCaGCg -3'
miRNA:   3'- cacCAuGGCGGGCu------CCUUCCGCG-CGa -5'
31143 5' -61.1 NC_006560.1 + 67888 0.66 0.676199
Target:  5'- gGUGGcGCCGCgacCCGAGGAgacccGGGuCGcCGCc -3'
miRNA:   3'- -CACCaUGGCG---GGCUCCU-----UCC-GC-GCGa -5'
31143 5' -61.1 NC_006560.1 + 4679 0.66 0.676199
Target:  5'- cGUGGcguCgCGCCCGGccacGgcGGCGCGCg -3'
miRNA:   3'- -CACCau-G-GCGGGCUc---CuuCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 87871 0.66 0.676199
Target:  5'- -cGGUGggGCgCGgguGGGggGGCGCGCc -3'
miRNA:   3'- caCCAUggCGgGC---UCCuuCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 147548 0.66 0.676199
Target:  5'- -cGGgcUgGCCCaugcgggcgggcGGGGAgaGGGCGCGCa -3'
miRNA:   3'- caCCauGgCGGG------------CUCCU--UCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 122645 0.66 0.676199
Target:  5'- ---cUGCgGCCCGcGGGggGGC-CGCUg -3'
miRNA:   3'- caccAUGgCGGGC-UCCuuCCGcGCGA- -5'
31143 5' -61.1 NC_006560.1 + 57152 0.66 0.666318
Target:  5'- -cGGcGCCGaCCCacgcGGGGuGGGCGCGUc -3'
miRNA:   3'- caCCaUGGC-GGG----CUCCuUCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 124815 0.66 0.666318
Target:  5'- -cGGcgACgCGCCCGucGcGGGCGUGCa -3'
miRNA:   3'- caCCa-UG-GCGGGCucCuUCCGCGCGa -5'
31143 5' -61.1 NC_006560.1 + 75205 0.66 0.666318
Target:  5'- cUGGagGCCGCCgCGcgcgcGGucgccGAGGCGCGCg -3'
miRNA:   3'- cACCa-UGGCGG-GCu----CC-----UUCCGCGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.