miRNA display CGI


Results 41 - 60 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31144 3' -61.4 NC_006560.1 + 118428 0.67 0.634092
Target:  5'- gCUaCCGCGCC-CCgggggcGAGGUccuGGGCGa -3'
miRNA:   3'- gGAgGGCGCGGuGGaa----CUCCA---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 57150 0.67 0.634092
Target:  5'- --gUCgGCGCCgACCcacgcGGGGUGGGCGc -3'
miRNA:   3'- ggaGGgCGCGG-UGGaa---CUCCACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 73608 0.67 0.63017
Target:  5'- --gCCCGgGCCGCCgccgaggaccggGAGGUGcGCGg -3'
miRNA:   3'- ggaGGGCgCGGUGGaa----------CUCCACcCGC- -5'
31144 3' -61.4 NC_006560.1 + 5372 0.67 0.624288
Target:  5'- uCCggcgagCCCGCGCCGCCgagcgGAGcGcGcGGCa -3'
miRNA:   3'- -GGa-----GGGCGCGGUGGaa---CUC-CaC-CCGc -5'
31144 3' -61.4 NC_006560.1 + 85519 0.67 0.624288
Target:  5'- gCUgCCCGCGgggGCgCUUGGGGgGGGCGg -3'
miRNA:   3'- gGA-GGGCGCgg-UG-GAACUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 137082 0.67 0.621347
Target:  5'- uCCUCCUGCGCCcggggcuggacgcgGCCaaGcGGgcccGGGCGu -3'
miRNA:   3'- -GGAGGGCGCGG--------------UGGaaCuCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 19193 0.67 0.621347
Target:  5'- gCCUCCCcaCGCCGCCggguugccaaaacagGAGacggGGGCGg -3'
miRNA:   3'- -GGAGGGc-GCGGUGGaa-------------CUCca--CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 129108 0.67 0.614489
Target:  5'- --gCCCGgGCCGCCgacacggagGAGGUcGGGUu -3'
miRNA:   3'- ggaGGGCgCGGUGGaa-------CUCCA-CCCGc -5'
31144 3' -61.4 NC_006560.1 + 143434 0.67 0.614489
Target:  5'- cCCgUCCCGCGguaCGCCc-GGGGcgagGGGCGa -3'
miRNA:   3'- -GG-AGGGCGCg--GUGGaaCUCCa---CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 67855 0.67 0.604702
Target:  5'- cCCgggCCgCGCGCCGCCcccaGAGGacguccGGGUGg -3'
miRNA:   3'- -GGa--GG-GCGCGGUGGaa--CUCCa-----CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 34022 0.67 0.604702
Target:  5'- cCCUCCCcUGCCugCUcgcggGAGGUcuggggaggucgGGGUGa -3'
miRNA:   3'- -GGAGGGcGCGGugGAa----CUCCA------------CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 1 0.68 0.594934
Target:  5'- --cCCCGCGCCGCgUUucccGGcgGGGCGg -3'
miRNA:   3'- ggaGGGCGCGGUGgAAcu--CCa-CCCGC- -5'
31144 3' -61.4 NC_006560.1 + 9623 0.68 0.594934
Target:  5'- cCCUggggCCGCGCCGaa--GGGGUGGGUGc -3'
miRNA:   3'- -GGAg---GGCGCGGUggaaCUCCACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 54469 0.68 0.594934
Target:  5'- cCCcCCCGCGUCGCg--GGGGUGauGGCa -3'
miRNA:   3'- -GGaGGGCGCGGUGgaaCUCCAC--CCGc -5'
31144 3' -61.4 NC_006560.1 + 114984 0.68 0.585191
Target:  5'- cCCUCCCGCGCCcgacGCCaggaUGAcGGacGGGUu -3'
miRNA:   3'- -GGAGGGCGCGG----UGGa---ACU-CCa-CCCGc -5'
31144 3' -61.4 NC_006560.1 + 27566 0.68 0.585191
Target:  5'- gCgcgCCCGCcggaagcugagGCCGCCggcgcgcGGGUGGGCGc -3'
miRNA:   3'- gGa--GGGCG-----------CGGUGGaac----UCCACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 54952 0.68 0.585191
Target:  5'- gCUCgCGCGCCGgCggcgGGGGaggcgacgggcgUGGGCGg -3'
miRNA:   3'- gGAGgGCGCGGUgGaa--CUCC------------ACCCGC- -5'
31144 3' -61.4 NC_006560.1 + 72221 0.68 0.585191
Target:  5'- aCgUCCCcgggaCGCCGCCggucggcGAGGgGGGCGg -3'
miRNA:   3'- -GgAGGGc----GCGGUGGaa-----CUCCaCCCGC- -5'
31144 3' -61.4 NC_006560.1 + 69661 0.68 0.584218
Target:  5'- aCC-CCCGCcgcgcccGCCACCccGGGGUcGGCGc -3'
miRNA:   3'- -GGaGGGCG-------CGGUGGaaCUCCAcCCGC- -5'
31144 3' -61.4 NC_006560.1 + 146945 0.68 0.569669
Target:  5'- gCCUgggCCUGCGUCagggccgggggccggGCCUgggcGGGUGGGCGg -3'
miRNA:   3'- -GGA---GGGCGCGG---------------UGGAac--UCCACCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.