miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3115 3' -60.1 NC_001493.1 + 64124 0.66 0.68495
Target:  5'- -aUGCgCCAGAcUCGGGGuuGUCCg-- -3'
miRNA:   3'- aaAUG-GGUCUuGGCCCCggCGGGagu -5'
3115 3' -60.1 NC_001493.1 + 100472 0.66 0.664755
Target:  5'- --aACCgCGacaaccCCGGGGCCGCCCg-- -3'
miRNA:   3'- aaaUGG-GUcuu---GGCCCCGGCGGGagu -5'
3115 3' -60.1 NC_001493.1 + 103365 0.67 0.63327
Target:  5'- --cACCCGGuguugacGACCGGGGUCGCgggguaCUCc -3'
miRNA:   3'- aaaUGGGUC-------UUGGCCCCGGCGg-----GAGu -5'
3115 3' -60.1 NC_001493.1 + 54924 0.67 0.624117
Target:  5'- -gUACCCGGGAaCGGGccCCGCCCa-- -3'
miRNA:   3'- aaAUGGGUCUUgGCCCc-GGCGGGagu -5'
3115 3' -60.1 NC_001493.1 + 14933 0.67 0.613953
Target:  5'- --cAgCCAGAAcCCGGcGGuCCGCCC-CAu -3'
miRNA:   3'- aaaUgGGUCUU-GGCC-CC-GGCGGGaGU- -5'
3115 3' -60.1 NC_001493.1 + 130487 0.67 0.613953
Target:  5'- --cAgCCAGAAcCCGGcGGuCCGCCC-CAu -3'
miRNA:   3'- aaaUgGGUCUU-GGCC-CC-GGCGGGaGU- -5'
3115 3' -60.1 NC_001493.1 + 48914 0.67 0.613953
Target:  5'- --aGCuCCAGAagACCauGGCCGUCCUCGa -3'
miRNA:   3'- aaaUG-GGUCU--UGGccCCGGCGGGAGU- -5'
3115 3' -60.1 NC_001493.1 + 8331 0.67 0.583572
Target:  5'- -gUGCCCGcuucGAACCguggaGGGGCCGCgcgUCUCGc -3'
miRNA:   3'- aaAUGGGU----CUUGG-----CCCCGGCG---GGAGU- -5'
3115 3' -60.1 NC_001493.1 + 123885 0.67 0.583572
Target:  5'- -gUGCCCGcuucGAACCguggaGGGGCCGCgcgUCUCGc -3'
miRNA:   3'- aaAUGGGU----CUUGG-----CCCCGGCG---GGAGU- -5'
3115 3' -60.1 NC_001493.1 + 42234 0.68 0.573504
Target:  5'- --gACaCAGGGggcacgucCCGGGGCCGCCCcuaUCAc -3'
miRNA:   3'- aaaUGgGUCUU--------GGCCCCGGCGGG---AGU- -5'
3115 3' -60.1 NC_001493.1 + 15686 0.68 0.553499
Target:  5'- --gACCCu---CCGGGGCCaCCUUCGa -3'
miRNA:   3'- aaaUGGGucuuGGCCCCGGcGGGAGU- -5'
3115 3' -60.1 NC_001493.1 + 126396 0.7 0.439352
Target:  5'- -aUACCC-GAACCauGGCCGCCgUCAu -3'
miRNA:   3'- aaAUGGGuCUUGGccCCGGCGGgAGU- -5'
3115 3' -60.1 NC_001493.1 + 10842 0.7 0.439352
Target:  5'- -aUACCC-GAACCauGGCCGCCgUCAu -3'
miRNA:   3'- aaAUGGGuCUUGGccCCGGCGGgAGU- -5'
3115 3' -60.1 NC_001493.1 + 131624 0.7 0.436666
Target:  5'- -gUGCCUGGAACauccuggucgaguaCGGGGCCGUCC-CGg -3'
miRNA:   3'- aaAUGGGUCUUG--------------GCCCCGGCGGGaGU- -5'
3115 3' -60.1 NC_001493.1 + 16069 0.7 0.436666
Target:  5'- -gUGCCUGGAACauccuggucgaguaCGGGGCCGUCC-CGg -3'
miRNA:   3'- aaAUGGGUCUUG--------------GCCCCGGCGGGaGU- -5'
3115 3' -60.1 NC_001493.1 + 17767 0.7 0.421626
Target:  5'- ---uCCCGGggUCGGGGCCGCaacgCGg -3'
miRNA:   3'- aaauGGGUCuuGGCCCCGGCGgga-GU- -5'
3115 3' -60.1 NC_001493.1 + 133321 0.7 0.421626
Target:  5'- ---uCCCGGggUCGGGGCCGCaacgCGg -3'
miRNA:   3'- aaauGGGUCuuGGCCCCGGCGgga-GU- -5'
3115 3' -60.1 NC_001493.1 + 19609 0.7 0.412926
Target:  5'- -gUACCCuccgcGAaauACCGGGGCCGUCUUgAg -3'
miRNA:   3'- aaAUGGGu----CU---UGGCCCCGGCGGGAgU- -5'
3115 3' -60.1 NC_001493.1 + 128598 0.75 0.223127
Target:  5'- ---uCCCuGGuguucGCCGGGGUCGCCCUCu -3'
miRNA:   3'- aaauGGGuCU-----UGGCCCCGGCGGGAGu -5'
3115 3' -60.1 NC_001493.1 + 13043 0.75 0.223127
Target:  5'- ---uCCCuGGuguucGCCGGGGUCGCCCUCu -3'
miRNA:   3'- aaauGGGuCU-----UGGCCCCGGCGGGAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.