miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3115 5' -59.1 NC_001493.1 + 128609 0.66 0.743528
Target:  5'- cGCCGGGGuCGCCCuC--UGGGuGa--- -3'
miRNA:   3'- -CGGCCCC-GCGGGcGaaACCCuCaauu -5'
3115 5' -59.1 NC_001493.1 + 13054 0.66 0.743528
Target:  5'- cGCCGGGGuCGCCCuC--UGGGuGa--- -3'
miRNA:   3'- -CGGCCCC-GCGGGcGaaACCCuCaauu -5'
3115 5' -59.1 NC_001493.1 + 87574 0.66 0.733792
Target:  5'- cCCGGGGCGCUCauggGUUccGGGGGg--- -3'
miRNA:   3'- cGGCCCCGCGGG----CGAaaCCCUCaauu -5'
3115 5' -59.1 NC_001493.1 + 111178 0.66 0.723968
Target:  5'- cGCCGGGGUGUgCCGUg-UGGGGu---- -3'
miRNA:   3'- -CGGCCCCGCG-GGCGaaACCCUcaauu -5'
3115 5' -59.1 NC_001493.1 + 14238 0.66 0.722981
Target:  5'- cGCgGGGGcCGCUaaccucacgggguUGCUccGGGGGUUGAu -3'
miRNA:   3'- -CGgCCCC-GCGG-------------GCGAaaCCCUCAAUU- -5'
3115 5' -59.1 NC_001493.1 + 129792 0.66 0.722981
Target:  5'- cGCgGGGGcCGCUaaccucacgggguUGCUccGGGGGUUGAu -3'
miRNA:   3'- -CGgCCCC-GCGG-------------GCGAaaCCCUCAAUU- -5'
3115 5' -59.1 NC_001493.1 + 123606 0.67 0.695067
Target:  5'- cCCGGGGCGUCCGUugaaaucgacccucgUUUcggggccaccgggcGGGAGggGAu -3'
miRNA:   3'- cGGCCCCGCGGGCG---------------AAA--------------CCCUCaaUU- -5'
3115 5' -59.1 NC_001493.1 + 8052 0.67 0.695067
Target:  5'- cCCGGGGCGUCCGUugaaaucgacccucgUUUcggggccaccgggcGGGAGggGAu -3'
miRNA:   3'- cGGCCCCGCGGGCG---------------AAA--------------CCCUCaaUU- -5'
3115 5' -59.1 NC_001493.1 + 61415 0.67 0.643301
Target:  5'- aGCgCGGGGCGCUucuuggguUGCUUUGguuucuucGGGGUUAc -3'
miRNA:   3'- -CG-GCCCCGCGG--------GCGAAAC--------CCUCAAUu -5'
3115 5' -59.1 NC_001493.1 + 75123 0.69 0.551993
Target:  5'- -gCGGGGCGCCCGCUguUUGaaGGcGUa-- -3'
miRNA:   3'- cgGCCCCGCGGGCGA--AAC--CCuCAauu -5'
3115 5' -59.1 NC_001493.1 + 80213 0.74 0.308609
Target:  5'- uCCGGGGCgGUCUGCUcgUGGGAGa--- -3'
miRNA:   3'- cGGCCCCG-CGGGCGAa-ACCCUCaauu -5'
3115 5' -59.1 NC_001493.1 + 36217 0.75 0.262042
Target:  5'- aCCGGGGCgGCCUGCgc-GGGGGUg-- -3'
miRNA:   3'- cGGCCCCG-CGGGCGaaaCCCUCAauu -5'
3115 5' -59.1 NC_001493.1 + 107077 1.07 0.00143
Target:  5'- cGCCGGGGCGCCCGCUUUGGGAGUUAAc -3'
miRNA:   3'- -CGGCCCCGCGGGCGAAACCCUCAAUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.