miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31151 3' -59.5 NC_006560.1 + 83298 0.66 0.813548
Target:  5'- uCGCccaGUCcGCCA-CCCgCGcCCUCCUCGg -3'
miRNA:   3'- -GCGc--UAGcUGGUaGGG-GC-GGAGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 53493 0.66 0.813548
Target:  5'- gCGCGAggacgaCGACC--CCCCGCCcCCgCGc -3'
miRNA:   3'- -GCGCUa-----GCUGGuaGGGGCGGaGGaGC- -5'
31151 3' -59.5 NC_006560.1 + 49257 0.66 0.813548
Target:  5'- gCGcCGGUCGACCGUCCCgCGCaCggacgugagUCUgGg -3'
miRNA:   3'- -GC-GCUAGCUGGUAGGG-GCG-Ga--------GGAgC- -5'
31151 3' -59.5 NC_006560.1 + 141908 0.66 0.805068
Target:  5'- cCGgGggCGACCG-CagCCGCCUCC-CGg -3'
miRNA:   3'- -GCgCuaGCUGGUaGg-GGCGGAGGaGC- -5'
31151 3' -59.5 NC_006560.1 + 86169 0.66 0.805068
Target:  5'- uGCGGUCGcccaugGCCGUCa--GCC-CCUCGg -3'
miRNA:   3'- gCGCUAGC------UGGUAGgggCGGaGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 29247 0.66 0.802496
Target:  5'- cCGCcccaGA-CGACCGUCggCCCGCCcggguucucucuccUCCUCGc -3'
miRNA:   3'- -GCG----CUaGCUGGUAG--GGGCGG--------------AGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 102449 0.66 0.796444
Target:  5'- cCGCGGcCG-CCGUCUCCaggGCCUCCa-- -3'
miRNA:   3'- -GCGCUaGCuGGUAGGGG---CGGAGGagc -5'
31151 3' -59.5 NC_006560.1 + 81476 0.66 0.796444
Target:  5'- aGCGGgggggagCG-CCggCCCCGCggCCUCGa -3'
miRNA:   3'- gCGCUa------GCuGGuaGGGGCGgaGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 124485 0.66 0.796444
Target:  5'- gGCGcgCGGCCGccgccgacCCCCGgCC-CCUCa -3'
miRNA:   3'- gCGCuaGCUGGUa-------GGGGC-GGaGGAGc -5'
31151 3' -59.5 NC_006560.1 + 46743 0.66 0.796444
Target:  5'- -cCGGUCGccuucGCCGUCCuCCGCUccccgUCCUCu -3'
miRNA:   3'- gcGCUAGC-----UGGUAGG-GGCGG-----AGGAGc -5'
31151 3' -59.5 NC_006560.1 + 71777 0.66 0.787681
Target:  5'- gGCGAgguggcuuucuUCGGCCAgCCCuCGCCgggCCUg- -3'
miRNA:   3'- gCGCU-----------AGCUGGUaGGG-GCGGa--GGAgc -5'
31151 3' -59.5 NC_006560.1 + 44823 0.66 0.787681
Target:  5'- gCGCGGcaggucugcgCGGCac-CCCCGCCgcUCCUCGc -3'
miRNA:   3'- -GCGCUa---------GCUGguaGGGGCGG--AGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 107460 0.66 0.787681
Target:  5'- nGCGAccgUCGGCCcgggggcgcUCgCCGCCUCCgCGc -3'
miRNA:   3'- gCGCU---AGCUGGu--------AGgGGCGGAGGaGC- -5'
31151 3' -59.5 NC_006560.1 + 14935 0.66 0.787681
Target:  5'- gGCaGcUCG-CCGUCCCCGgcccccucccCCUCCUCc -3'
miRNA:   3'- gCG-CuAGCuGGUAGGGGC----------GGAGGAGc -5'
31151 3' -59.5 NC_006560.1 + 79849 0.66 0.787681
Target:  5'- gCGCGGacCGAgccgggccgcccCCGcCCCCGCCacgCCUCGg -3'
miRNA:   3'- -GCGCUa-GCU------------GGUaGGGGCGGa--GGAGC- -5'
31151 3' -59.5 NC_006560.1 + 5529 0.66 0.787681
Target:  5'- gGCGGUCGcgcucuuCCGUCCCCccgGCCggacCCgUCGa -3'
miRNA:   3'- gCGCUAGCu------GGUAGGGG---CGGa---GG-AGC- -5'
31151 3' -59.5 NC_006560.1 + 35004 0.66 0.785026
Target:  5'- cCGCGGgcCGGCCgggcgcccccuccgGUCCgCCGCCgccCCUCa -3'
miRNA:   3'- -GCGCUa-GCUGG--------------UAGG-GGCGGa--GGAGc -5'
31151 3' -59.5 NC_006560.1 + 96028 0.66 0.78236
Target:  5'- uCGCGGcaccccccccuccuuUCuucCCcUCCCCGuCCUCCUCGc -3'
miRNA:   3'- -GCGCU---------------AGcu-GGuAGGGGC-GGAGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 72799 0.66 0.778787
Target:  5'- aGCGAgUCG-CCggCCCCGCCgCCggaaCGg -3'
miRNA:   3'- gCGCU-AGCuGGuaGGGGCGGaGGa---GC- -5'
31151 3' -59.5 NC_006560.1 + 39674 0.66 0.778787
Target:  5'- cCGCGccccgGGCCG-CCCCGCCgcCCUCu -3'
miRNA:   3'- -GCGCuag--CUGGUaGGGGCGGa-GGAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.