miRNA display CGI


Results 1 - 20 of 111 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31151 3' -59.5 NC_006560.1 + 132139 0.78 0.196283
Target:  5'- uGcCGAUCGACCucuacCCCCGCCcCCUCGu -3'
miRNA:   3'- gC-GCUAGCUGGua---GGGGCGGaGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 15361 0.78 0.210872
Target:  5'- uCGCGGUgaGGCCGggacucccCCCCGCCUCCUCc -3'
miRNA:   3'- -GCGCUAg-CUGGUa-------GGGGCGGAGGAGc -5'
31151 3' -59.5 NC_006560.1 + 7366 0.76 0.260309
Target:  5'- uCGCGAgcccCGACCccuucgagagCCCCGaCCUCCUCGa -3'
miRNA:   3'- -GCGCUa---GCUGGua--------GGGGC-GGAGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 121530 0.75 0.291652
Target:  5'- gCGCGGUCGccGCCAaagUCCCGCCcCCUCa -3'
miRNA:   3'- -GCGCUAGC--UGGUa--GGGGCGGaGGAGc -5'
31151 3' -59.5 NC_006560.1 + 52765 0.75 0.304992
Target:  5'- gCGCGA-CG-CCAUCCaCCGCCUCCa-- -3'
miRNA:   3'- -GCGCUaGCuGGUAGG-GGCGGAGGagc -5'
31151 3' -59.5 NC_006560.1 + 29705 0.74 0.347793
Target:  5'- aCGgGGgccgCGACCG-CCCCGCCUCCg-- -3'
miRNA:   3'- -GCgCUa---GCUGGUaGGGGCGGAGGagc -5'
31151 3' -59.5 NC_006560.1 + 72667 0.74 0.347793
Target:  5'- gGCGG-CGACCAgCCCCGCC-CgUCGa -3'
miRNA:   3'- gCGCUaGCUGGUaGGGGCGGaGgAGC- -5'
31151 3' -59.5 NC_006560.1 + 10809 0.74 0.347793
Target:  5'- gGCGAga-GCCAUCCCCGCUUCUcgUCGu -3'
miRNA:   3'- gCGCUagcUGGUAGGGGCGGAGG--AGC- -5'
31151 3' -59.5 NC_006560.1 + 101486 0.74 0.355331
Target:  5'- uCGCGGUCGGCCccggaggccCCCCGCgCgaucgCCUCGg -3'
miRNA:   3'- -GCGCUAGCUGGua-------GGGGCG-Ga----GGAGC- -5'
31151 3' -59.5 NC_006560.1 + 12858 0.74 0.355331
Target:  5'- uGCcGUUGGCCGUCUCCGUCaCCUCGg -3'
miRNA:   3'- gCGcUAGCUGGUAGGGGCGGaGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 19077 0.74 0.362983
Target:  5'- cCGCGGUgUGA-CAUCCCCGCCcCCUCc -3'
miRNA:   3'- -GCGCUA-GCUgGUAGGGGCGGaGGAGc -5'
31151 3' -59.5 NC_006560.1 + 67440 0.74 0.370748
Target:  5'- uGCGGUCGguggcGCCgGUCCCCGUCgcggUCCUCGc -3'
miRNA:   3'- gCGCUAGC-----UGG-UAGGGGCGG----AGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 85617 0.73 0.378626
Target:  5'- aGCGcGUCGAuCCGcgCCaCCGUCUCCUCGa -3'
miRNA:   3'- gCGC-UAGCU-GGUa-GG-GGCGGAGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 123209 0.73 0.378626
Target:  5'- uGCGGcgGGCCGUCCUCGCCgacuucagCCUCGu -3'
miRNA:   3'- gCGCUagCUGGUAGGGGCGGa-------GGAGC- -5'
31151 3' -59.5 NC_006560.1 + 110666 0.73 0.378626
Target:  5'- cCGCGAccUCGACCGaaCCCCGCCcUCUCc -3'
miRNA:   3'- -GCGCU--AGCUGGUa-GGGGCGGaGGAGc -5'
31151 3' -59.5 NC_006560.1 + 144608 0.73 0.378626
Target:  5'- cCGCGAccccccugcccUCGcCCGccuUCCCCGCCUuccCCUCGg -3'
miRNA:   3'- -GCGCU-----------AGCuGGU---AGGGGCGGA---GGAGC- -5'
31151 3' -59.5 NC_006560.1 + 86849 0.73 0.402925
Target:  5'- cCGCGccGUCGGCguCGUCCCCGuCCUCCcCGc -3'
miRNA:   3'- -GCGC--UAGCUG--GUAGGGGC-GGAGGaGC- -5'
31151 3' -59.5 NC_006560.1 + 102415 0.73 0.411242
Target:  5'- uCGgGcgCGGCCGcggCgUCCGCCUCCUCGg -3'
miRNA:   3'- -GCgCuaGCUGGUa--G-GGGCGGAGGAGC- -5'
31151 3' -59.5 NC_006560.1 + 45646 0.73 0.418817
Target:  5'- aCGCGGgugccUCGACCgcgccGUCCCCguccgccccggggGCCUCCUCc -3'
miRNA:   3'- -GCGCU-----AGCUGG-----UAGGGG-------------CGGAGGAGc -5'
31151 3' -59.5 NC_006560.1 + 124150 0.72 0.445543
Target:  5'- gGCGGgggaGGCCGagCCCCGCCUCCcCa -3'
miRNA:   3'- gCGCUag--CUGGUa-GGGGCGGAGGaGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.