miRNA display CGI


Results 1 - 20 of 230 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31151 5' -56 NC_006560.1 + 22306 0.66 0.912304
Target:  5'- aCGCCGGCGAcGAgcucgcggagcucgcGGAGcucgcggAGCUCGcGGCg -3'
miRNA:   3'- -GCGGUCGCU-CU---------------UCUCua-----UCGGGU-CCG- -5'
31151 5' -56 NC_006560.1 + 26798 0.66 0.909899
Target:  5'- aGCCGGgGAGAGcGAGAccGaCgGGGCg -3'
miRNA:   3'- gCGGUCgCUCUU-CUCUauCgGgUCCG- -5'
31151 5' -56 NC_006560.1 + 36130 0.66 0.909899
Target:  5'- cCGCCGcCGGGGucGAGccgGGCCCGccGGCg -3'
miRNA:   3'- -GCGGUcGCUCUu-CUCua-UCGGGU--CCG- -5'
31151 5' -56 NC_006560.1 + 141772 0.66 0.909899
Target:  5'- gCGCgCGGCGAGAgcGGccgcguguaaacGGAcAGCCCGGaGUg -3'
miRNA:   3'- -GCG-GUCGCUCU--UC------------UCUaUCGGGUC-CG- -5'
31151 5' -56 NC_006560.1 + 123052 0.66 0.909899
Target:  5'- cCGCgCGGCGAGcacccccuGGuGAUcccGGCCCucGGCg -3'
miRNA:   3'- -GCG-GUCGCUCu-------UCuCUA---UCGGGu-CCG- -5'
31151 5' -56 NC_006560.1 + 134893 0.66 0.909292
Target:  5'- gGCCGGCGcaucaccGGcacGA---GGCCCAGGCa -3'
miRNA:   3'- gCGGUCGC-------UCuu-CUcuaUCGGGUCCG- -5'
31151 5' -56 NC_006560.1 + 20679 0.66 0.903721
Target:  5'- gCGCgGGCGGGcAGA---GGCCgAGGUg -3'
miRNA:   3'- -GCGgUCGCUCuUCUcuaUCGGgUCCG- -5'
31151 5' -56 NC_006560.1 + 144343 0.66 0.903721
Target:  5'- cCGCC-GCGGGcgcGAGAcGGCCgCGGGg -3'
miRNA:   3'- -GCGGuCGCUCuu-CUCUaUCGG-GUCCg -5'
31151 5' -56 NC_006560.1 + 102181 0.66 0.903721
Target:  5'- cCGCgGGCGGuGAGGGGGaAGUCgGcGGCg -3'
miRNA:   3'- -GCGgUCGCU-CUUCUCUaUCGGgU-CCG- -5'
31151 5' -56 NC_006560.1 + 107862 0.66 0.903721
Target:  5'- gGCCAGCaccaGGGAGGUcacGCCCgucAGGCg -3'
miRNA:   3'- gCGGUCGcuc-UUCUCUAu--CGGG---UCCG- -5'
31151 5' -56 NC_006560.1 + 32426 0.66 0.903721
Target:  5'- cCGcCCAGgGGGccGGGG-GGCCgGGGCu -3'
miRNA:   3'- -GC-GGUCgCUCuuCUCUaUCGGgUCCG- -5'
31151 5' -56 NC_006560.1 + 32111 0.66 0.903721
Target:  5'- gGCaGGCGGGGcAGcGAgcggGGCCCGGGg -3'
miRNA:   3'- gCGgUCGCUCU-UCuCUa---UCGGGUCCg -5'
31151 5' -56 NC_006560.1 + 147384 0.66 0.903721
Target:  5'- uGCgGGgGGGGcGGAGGggAGCgCGGGCg -3'
miRNA:   3'- gCGgUCgCUCU-UCUCUa-UCGgGUCCG- -5'
31151 5' -56 NC_006560.1 + 3950 0.66 0.903721
Target:  5'- gGUCGGCGGcGAGGGc-GGCcgCCAGGCg -3'
miRNA:   3'- gCGGUCGCUcUUCUCuaUCG--GGUCCG- -5'
31151 5' -56 NC_006560.1 + 58366 0.66 0.903721
Target:  5'- cCGUCucuuccGCGGGggGAGcgGcGCCCGcgucGGCg -3'
miRNA:   3'- -GCGGu-----CGCUCuuCUCuaU-CGGGU----CCG- -5'
31151 5' -56 NC_006560.1 + 88330 0.66 0.903721
Target:  5'- uGCCGGa-GGggGuGAUGGCguCCAGGa -3'
miRNA:   3'- gCGGUCgcUCuuCuCUAUCG--GGUCCg -5'
31151 5' -56 NC_006560.1 + 26071 0.66 0.903721
Target:  5'- aGCCGuGCGGGcGGAacccgGGcGGCCCGGcGCg -3'
miRNA:   3'- gCGGU-CGCUCuUCU-----CUaUCGGGUC-CG- -5'
31151 5' -56 NC_006560.1 + 99839 0.66 0.903721
Target:  5'- gGgCGGcCGGGAuccAGAGGUAGCUCccgucgccgggGGGCg -3'
miRNA:   3'- gCgGUC-GCUCU---UCUCUAUCGGG-----------UCCG- -5'
31151 5' -56 NC_006560.1 + 140320 0.66 0.8999
Target:  5'- gCGCCGGgGAgucaaaggucaccccGgcGGGAcAGCCCcgcGGGCg -3'
miRNA:   3'- -GCGGUCgCU---------------CuuCUCUaUCGGG---UCCG- -5'
31151 5' -56 NC_006560.1 + 135425 0.66 0.897306
Target:  5'- cCGUCGGCGAGAgcgccGGAGAcgcgAGCgCCucGCc -3'
miRNA:   3'- -GCGGUCGCUCU-----UCUCUa---UCG-GGucCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.