miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31157 3' -56.7 NC_006560.1 + 33066 0.66 0.908688
Target:  5'- aAGGCGgCCGAGGgGAaggCGGGgaaggcGGGCg -3'
miRNA:   3'- -UCCGCaGGCUCUgCUa--GUCCa-----CCUGg -5'
31157 3' -56.7 NC_006560.1 + 147898 0.66 0.908688
Target:  5'- cGGCGcagaccUCgCGGGGCGGgggCGGGggagaggGGGCCc -3'
miRNA:   3'- uCCGC------AG-GCUCUGCUa--GUCCa------CCUGG- -5'
31157 3' -56.7 NC_006560.1 + 148412 0.66 0.908688
Target:  5'- gGGGCGcUCCGGGcgggccgGCGAggaggagagagaaccCGGGcGGGCCg -3'
miRNA:   3'- -UCCGC-AGGCUC-------UGCUa--------------GUCCaCCUGG- -5'
31157 3' -56.7 NC_006560.1 + 22889 0.66 0.908688
Target:  5'- gGGGC-UCUGGGGCGcgCccgAGGUGGcggaggcgcGCCg -3'
miRNA:   3'- -UCCGcAGGCUCUGCuaG---UCCACC---------UGG- -5'
31157 3' -56.7 NC_006560.1 + 17353 0.66 0.908688
Target:  5'- cGGCGUCa-GGGCGc---GGUGGAUCg -3'
miRNA:   3'- uCCGCAGgcUCUGCuaguCCACCUGG- -5'
31157 3' -56.7 NC_006560.1 + 68351 0.66 0.908688
Target:  5'- cGGGCcUUCGAGGCGA-----UGGACCa -3'
miRNA:   3'- -UCCGcAGGCUCUGCUaguccACCUGG- -5'
31157 3' -56.7 NC_006560.1 + 146837 0.66 0.908688
Target:  5'- uGGGCGUgCUGcGGCGGcgCGGGgcgGGGCg -3'
miRNA:   3'- -UCCGCA-GGCuCUGCUa-GUCCa--CCUGg -5'
31157 3' -56.7 NC_006560.1 + 9864 0.66 0.908688
Target:  5'- cGGCGUCCGugGGGCac-CGGGgGGGCg -3'
miRNA:   3'- uCCGCAGGC--UCUGcuaGUCCaCCUGg -5'
31157 3' -56.7 NC_006560.1 + 1971 0.66 0.908688
Target:  5'- aGGGCGggggCGGGGC--UCGGGgccGGGCCa -3'
miRNA:   3'- -UCCGCag--GCUCUGcuAGUCCa--CCUGG- -5'
31157 3' -56.7 NC_006560.1 + 122796 0.66 0.90259
Target:  5'- cGGCGggUCCGGGggguACGGcgAGGUGGAgCu -3'
miRNA:   3'- uCCGC--AGGCUC----UGCUagUCCACCUgG- -5'
31157 3' -56.7 NC_006560.1 + 11643 0.66 0.90259
Target:  5'- cGGCgGUCCG-GGCGggCGGG-GGAg- -3'
miRNA:   3'- uCCG-CAGGCuCUGCuaGUCCaCCUgg -5'
31157 3' -56.7 NC_006560.1 + 58216 0.66 0.90259
Target:  5'- cGGGC-UCCGGGcucgccggaGCGA-CGGGggccggGGGCCg -3'
miRNA:   3'- -UCCGcAGGCUC---------UGCUaGUCCa-----CCUGG- -5'
31157 3' -56.7 NC_006560.1 + 79825 0.66 0.90259
Target:  5'- uGGCG-CCGGGcgGCGAuuUCGGcGgcgcGGACCg -3'
miRNA:   3'- uCCGCaGGCUC--UGCU--AGUC-Ca---CCUGG- -5'
31157 3' -56.7 NC_006560.1 + 116040 0.66 0.90259
Target:  5'- gGGGCcgacagaaacaGUCuCGAGGCG---GGGUGGGCUc -3'
miRNA:   3'- -UCCG-----------CAG-GCUCUGCuagUCCACCUGG- -5'
31157 3' -56.7 NC_006560.1 + 67332 0.66 0.90259
Target:  5'- gGGGCGcUCCG-GA-GAUCGcGGgcccgGGGCCc -3'
miRNA:   3'- -UCCGC-AGGCuCUgCUAGU-CCa----CCUGG- -5'
31157 3' -56.7 NC_006560.1 + 3497 0.66 0.90259
Target:  5'- cGGCGUCgGcGGCGuccagCAGG-GGGCg -3'
miRNA:   3'- uCCGCAGgCuCUGCua---GUCCaCCUGg -5'
31157 3' -56.7 NC_006560.1 + 92917 0.66 0.90259
Target:  5'- uGGaCGaCCGAGGCGGcgCuggAGGUGGcCCa -3'
miRNA:   3'- uCC-GCaGGCUCUGCUa-G---UCCACCuGG- -5'
31157 3' -56.7 NC_006560.1 + 138813 0.66 0.90259
Target:  5'- cGGCGccuggggaccaCCGGGGCGAugacguugUCGcGGUGGACg -3'
miRNA:   3'- uCCGCa----------GGCUCUGCU--------AGU-CCACCUGg -5'
31157 3' -56.7 NC_006560.1 + 109162 0.66 0.90259
Target:  5'- uGGCGaucucgCCGGGccgGCGGUCGcGUGGGCg -3'
miRNA:   3'- uCCGCa-----GGCUC---UGCUAGUcCACCUGg -5'
31157 3' -56.7 NC_006560.1 + 128313 0.66 0.90259
Target:  5'- gGGGCGUCCccccggggccGGGACGuucuUCGGGgagcUGGAg- -3'
miRNA:   3'- -UCCGCAGG----------CUCUGCu---AGUCC----ACCUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.