miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3116 5' -61.8 NC_001493.1 + 102130 0.66 0.661348
Target:  5'- -gGGCGGGCacagGCGGCcCUGAgCACccgaGGGg -3'
miRNA:   3'- ugUCGCCCG----CGCCGaGGCUaGUG----CCC- -5'
3116 5' -61.8 NC_001493.1 + 83526 0.66 0.661347
Target:  5'- gUAGCGGGCuCGGCgggGGUCACGucaGGg -3'
miRNA:   3'- uGUCGCCCGcGCCGaggCUAGUGC---CC- -5'
3116 5' -61.8 NC_001493.1 + 116859 0.66 0.651523
Target:  5'- -aAGCGGGCaccGCGGUgacUCCGGaugaagccaACGGGa -3'
miRNA:   3'- ugUCGCCCG---CGCCG---AGGCUag-------UGCCC- -5'
3116 5' -61.8 NC_001493.1 + 1305 0.66 0.651523
Target:  5'- -aAGCGGGCaccGCGGUgacUCCGGaugaagccaACGGGa -3'
miRNA:   3'- ugUCGCCCG---CGCCG---AGGCUag-------UGCCC- -5'
3116 5' -61.8 NC_001493.1 + 91619 0.66 0.641684
Target:  5'- --cGCGGGCGCaccCUCCG-UCugGGa -3'
miRNA:   3'- uguCGCCCGCGcc-GAGGCuAGugCCc -5'
3116 5' -61.8 NC_001493.1 + 87337 0.66 0.631838
Target:  5'- uGCGGCGgaggaGGUGCacucGGUgCCGAUCcCGGGg -3'
miRNA:   3'- -UGUCGC-----CCGCG----CCGaGGCUAGuGCCC- -5'
3116 5' -61.8 NC_001493.1 + 44367 0.66 0.621992
Target:  5'- --cGCaGGCgauccacgGUGGCUCUGGUCACGaGGu -3'
miRNA:   3'- uguCGcCCG--------CGCCGAGGCUAGUGC-CC- -5'
3116 5' -61.8 NC_001493.1 + 4708 0.67 0.582746
Target:  5'- cCGG-GGGCGCGGCagCGG-CGgGGGu -3'
miRNA:   3'- uGUCgCCCGCGCCGagGCUaGUgCCC- -5'
3116 5' -61.8 NC_001493.1 + 102562 0.67 0.553634
Target:  5'- cACGGguaCGGGgGCGGUUCCuucGAccggCGCGGGc -3'
miRNA:   3'- -UGUC---GCCCgCGCCGAGG---CUa---GUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 55628 0.68 0.52497
Target:  5'- cAUAGCGauCGgGGCUCUGAUCGCGa- -3'
miRNA:   3'- -UGUCGCccGCgCCGAGGCUAGUGCcc -5'
3116 5' -61.8 NC_001493.1 + 123564 0.68 0.496886
Target:  5'- -gGGCGGGaG-GGgaUCGAUCACGGGu -3'
miRNA:   3'- ugUCGCCCgCgCCgaGGCUAGUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 8010 0.68 0.496886
Target:  5'- -gGGCGGGaG-GGgaUCGAUCACGGGu -3'
miRNA:   3'- ugUCGCCCgCgCCgaGGCUAGUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 34426 0.69 0.487675
Target:  5'- gGCAGCuGGCGgacccacccaCGuGCU-CGAUCACGGGc -3'
miRNA:   3'- -UGUCGcCCGC----------GC-CGAgGCUAGUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 32441 0.69 0.469499
Target:  5'- aGCGGCGGuGCGUucGUguacaCGAUCGCGGGu -3'
miRNA:   3'- -UGUCGCC-CGCGc-CGag---GCUAGUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 28291 0.69 0.460542
Target:  5'- cGCAaCGuGGCGCuGCUCCGcGUCcCGGGa -3'
miRNA:   3'- -UGUcGC-CCGCGcCGAGGC-UAGuGCCC- -5'
3116 5' -61.8 NC_001493.1 + 119339 0.69 0.460542
Target:  5'- -gGGCGaGGCGCGGCgguUUCGAggugaugUGCGGGu -3'
miRNA:   3'- ugUCGC-CCGCGCCG---AGGCUa------GUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 3785 0.69 0.460542
Target:  5'- -gGGCGaGGCGCGGCgguUUCGAggugaugUGCGGGu -3'
miRNA:   3'- ugUCGC-CCGCGCCG---AGGCUa------GUGCCC- -5'
3116 5' -61.8 NC_001493.1 + 14919 0.69 0.442905
Target:  5'- cGguGCGGGUGCgGGC-CCGAgggaaAUGGGa -3'
miRNA:   3'- -UguCGCCCGCG-CCGaGGCUag---UGCCC- -5'
3116 5' -61.8 NC_001493.1 + 130473 0.69 0.442905
Target:  5'- cGguGCGGGUGCgGGC-CCGAgggaaAUGGGa -3'
miRNA:   3'- -UguCGCCCGCG-CCGaGGCUag---UGCCC- -5'
3116 5' -61.8 NC_001493.1 + 47233 0.7 0.434229
Target:  5'- aGCGGCGGG-GUGGCaCCGGUCA-GGu -3'
miRNA:   3'- -UGUCGCCCgCGCCGaGGCUAGUgCCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.