miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31161 3' -57.4 NC_006560.1 + 116959 0.66 0.858259
Target:  5'- ----aGGUCgGCCGUGCGCCgcaGGGCg -3'
miRNA:   3'- cagagCCAG-UGGUACGCGGaggUCUG- -5'
31161 3' -57.4 NC_006560.1 + 92326 0.66 0.858259
Target:  5'- gGUCg-GGUCccGCCGgcccaccaGCCUCCAGGCg -3'
miRNA:   3'- -CAGagCCAG--UGGUacg-----CGGAGGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 131557 0.66 0.858259
Target:  5'- ---gCGGUCugCGggaacgaggGCGCCUCCcucugGGGCg -3'
miRNA:   3'- cagaGCCAGugGUa--------CGCGGAGG-----UCUG- -5'
31161 3' -57.4 NC_006560.1 + 18074 0.66 0.842483
Target:  5'- uUCUCGGUCcCCccGCcCCUCgAGAg -3'
miRNA:   3'- cAGAGCCAGuGGuaCGcGGAGgUCUg -5'
31161 3' -57.4 NC_006560.1 + 66476 0.66 0.842483
Target:  5'- -aCUCGG---CCA-GCGCgUCCAGGCg -3'
miRNA:   3'- caGAGCCaguGGUaCGCGgAGGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 74866 0.66 0.842483
Target:  5'- -cCUCGaGUCGCCcgGgcCGUCUCCgAGGCc -3'
miRNA:   3'- caGAGC-CAGUGGuaC--GCGGAGG-UCUG- -5'
31161 3' -57.4 NC_006560.1 + 53082 0.66 0.842483
Target:  5'- cGUCuUCGGgCACC-UGCGgCUCguGGCc -3'
miRNA:   3'- -CAG-AGCCaGUGGuACGCgGAGguCUG- -5'
31161 3' -57.4 NC_006560.1 + 3002 0.66 0.834306
Target:  5'- -gCUCGGggACCugGCGCaUCCAGGCg -3'
miRNA:   3'- caGAGCCagUGGuaCGCGgAGGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 125052 0.66 0.834306
Target:  5'- ---gCGGUCGCCG-GCGgaCUUCCGGGCc -3'
miRNA:   3'- cagaGCCAGUGGUaCGC--GGAGGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 139929 0.66 0.834306
Target:  5'- ---cCGcUCAUCGU-CGCCUCCGGACa -3'
miRNA:   3'- cagaGCcAGUGGUAcGCGGAGGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 41388 0.66 0.817409
Target:  5'- -gCUCGGUCGuCCuggacgaGCGCCcgCUGGACg -3'
miRNA:   3'- caGAGCCAGU-GGua-----CGCGGa-GGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 57926 0.66 0.817409
Target:  5'- cGUCUCGcGUCGCCcgccuuccccccGUGCGCgC-CCGcGGCg -3'
miRNA:   3'- -CAGAGC-CAGUGG------------UACGCG-GaGGU-CUG- -5'
31161 3' -57.4 NC_006560.1 + 91236 0.66 0.817409
Target:  5'- uUCUCGGcCAUCAagcGCGCCgacguggCCgAGACg -3'
miRNA:   3'- cAGAGCCaGUGGUa--CGCGGa------GG-UCUG- -5'
31161 3' -57.4 NC_006560.1 + 138055 0.66 0.816546
Target:  5'- -cCUCGGUaCGCgAUgaGCGCCUCCGcguccucGGCg -3'
miRNA:   3'- caGAGCCA-GUGgUA--CGCGGAGGU-------CUG- -5'
31161 3' -57.4 NC_006560.1 + 134061 0.67 0.808706
Target:  5'- gGUCgCGGUCGCgCAgcUGCGUCgCCAGGu -3'
miRNA:   3'- -CAGaGCCAGUG-GU--ACGCGGaGGUCUg -5'
31161 3' -57.4 NC_006560.1 + 142361 0.67 0.799843
Target:  5'- -cCUCGGggGCCGggggcgGCgGCCUCCGGGa -3'
miRNA:   3'- caGAGCCagUGGUa-----CG-CGGAGGUCUg -5'
31161 3' -57.4 NC_006560.1 + 96067 0.67 0.790829
Target:  5'- -cCUCGcccUCGCCGUGauCGCCgcggCCGGACg -3'
miRNA:   3'- caGAGCc--AGUGGUAC--GCGGa---GGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 28261 0.68 0.753437
Target:  5'- aUCUcCGGagcUCGCUGUGCGCCcgacguucUCCAGAg -3'
miRNA:   3'- cAGA-GCC---AGUGGUACGCGG--------AGGUCUg -5'
31161 3' -57.4 NC_006560.1 + 14317 0.68 0.7438
Target:  5'- --gUUGGUCACCAgcGCgGCCgcCCAGGCg -3'
miRNA:   3'- cagAGCCAGUGGUa-CG-CGGa-GGUCUG- -5'
31161 3' -57.4 NC_006560.1 + 99630 0.68 0.718312
Target:  5'- gGUCcgCGGcgauggCGCCGaccagcgcggcgaucUGCGCCUCCAGGg -3'
miRNA:   3'- -CAGa-GCCa-----GUGGU---------------ACGCGGAGGUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.