miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31161 5' -53 NC_006560.1 + 92895 0.66 0.978281
Target:  5'- ---cCUGgagcGCGGCgGCGGCgagugGACGACCg -3'
miRNA:   3'- cauaGAC----UGCCG-CGUCGag---CUGUUGG- -5'
31161 5' -53 NC_006560.1 + 131502 0.66 0.978281
Target:  5'- -cGUCgucGCGGCcgucgggcuGCGGCUCGaggcgGCGGCCg -3'
miRNA:   3'- caUAGac-UGCCG---------CGUCGAGC-----UGUUGG- -5'
31161 5' -53 NC_006560.1 + 114048 0.66 0.978281
Target:  5'- -----cGGCGGcCGUGGCcaCGGCGGCCg -3'
miRNA:   3'- cauagaCUGCC-GCGUCGa-GCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 12352 0.66 0.978281
Target:  5'- ---gCUGGCGGgGCGGgcguCUCGACGGg- -3'
miRNA:   3'- cauaGACUGCCgCGUC----GAGCUGUUgg -5'
31161 5' -53 NC_006560.1 + 75126 0.66 0.978281
Target:  5'- ---cCUGGgGGcCGCGGC-CGcCGACCu -3'
miRNA:   3'- cauaGACUgCC-GCGUCGaGCuGUUGG- -5'
31161 5' -53 NC_006560.1 + 40602 0.66 0.978281
Target:  5'- ---gCUGcACGGa-CAGCUCGcacaGCAGCCg -3'
miRNA:   3'- cauaGAC-UGCCgcGUCGAGC----UGUUGG- -5'
31161 5' -53 NC_006560.1 + 102942 0.66 0.978281
Target:  5'- -----cGGCGGCGCGGUgCGcGCGGCUc -3'
miRNA:   3'- cauagaCUGCCGCGUCGaGC-UGUUGG- -5'
31161 5' -53 NC_006560.1 + 98429 0.66 0.978281
Target:  5'- -----cGACGGCGCgccgcuGGCgggCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCGCG------UCGa--GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 20943 0.66 0.978281
Target:  5'- -----cGGCGGCGaCGGCguuugCGGCgGGCCg -3'
miRNA:   3'- cauagaCUGCCGC-GUCGa----GCUG-UUGG- -5'
31161 5' -53 NC_006560.1 + 83007 0.66 0.978281
Target:  5'- aGUGcCUGGCGGCGCcccaguGCgccgcCGGCAucuucgugGCCg -3'
miRNA:   3'- -CAUaGACUGCCGCGu-----CGa----GCUGU--------UGG- -5'
31161 5' -53 NC_006560.1 + 124561 0.66 0.975824
Target:  5'- ---gCUGugGGCccugcuGCGGCgggggcugaCGACGGCCu -3'
miRNA:   3'- cauaGACugCCG------CGUCGa--------GCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 92370 0.66 0.975824
Target:  5'- -gGUCUcugcgcGGCGGCGCGGCccUGGaGGCCg -3'
miRNA:   3'- caUAGA------CUGCCGCGUCGa-GCUgUUGG- -5'
31161 5' -53 NC_006560.1 + 112254 0.66 0.975824
Target:  5'- ----gUGGCaGCGcCGGCUCGcccACGGCCg -3'
miRNA:   3'- cauagACUGcCGC-GUCGAGC---UGUUGG- -5'
31161 5' -53 NC_006560.1 + 7918 0.66 0.975824
Target:  5'- ---cCUGGCGGacgGCGGC-CGugAACUu -3'
miRNA:   3'- cauaGACUGCCg--CGUCGaGCugUUGG- -5'
31161 5' -53 NC_006560.1 + 3788 0.66 0.97317
Target:  5'- -----cGGCGcGCGCGGC-CGcCAGCCc -3'
miRNA:   3'- cauagaCUGC-CGCGUCGaGCuGUUGG- -5'
31161 5' -53 NC_006560.1 + 15281 0.66 0.97317
Target:  5'- -gGUCgcggGAgcCGGCGCGGCggCGGUGGCCu -3'
miRNA:   3'- caUAGa---CU--GCCGCGUCGa-GCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 83350 0.66 0.97317
Target:  5'- -----gGAgGGCGCGGg-CGGCGGCCc -3'
miRNA:   3'- cauagaCUgCCGCGUCgaGCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 60896 0.66 0.97317
Target:  5'- -cGUCccgGAC-GCGCAGCUCGucGCGgagcACCg -3'
miRNA:   3'- caUAGa--CUGcCGCGUCGAGC--UGU----UGG- -5'
31161 5' -53 NC_006560.1 + 85070 0.66 0.97317
Target:  5'- -cGUUUGugcucgugguGCGGCGCGGCgcggaaagaaCGACGACg -3'
miRNA:   3'- caUAGAC----------UGCCGCGUCGa---------GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 115748 0.66 0.97317
Target:  5'- -----aGGCGGCGCAGCU-GAUccACCc -3'
miRNA:   3'- cauagaCUGCCGCGUCGAgCUGu-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.