miRNA display CGI


Results 1 - 20 of 157 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31161 5' -53 NC_006560.1 + 18 0.73 0.738066
Target:  5'- -----cGGCGGgGCGGUUCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCgCGUCGAGCUGUUGg -5'
31161 5' -53 NC_006560.1 + 1889 0.71 0.831266
Target:  5'- -gGUCgcgggcGGCGGCGcCGGCuaccaguccUCGGCGGCCg -3'
miRNA:   3'- caUAGa-----CUGCCGC-GUCG---------AGCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 2039 0.74 0.645703
Target:  5'- ----gUGuCGGCGCGGC-CGGCGGCCc -3'
miRNA:   3'- cauagACuGCCGCGUCGaGCUGUUGG- -5'
31161 5' -53 NC_006560.1 + 2340 0.69 0.899481
Target:  5'- -aGUC-GGCGGCGCGGC-CGuCGAgCg -3'
miRNA:   3'- caUAGaCUGCCGCGUCGaGCuGUUgG- -5'
31161 5' -53 NC_006560.1 + 3026 0.66 0.968493
Target:  5'- -----cGGCGGCGCGGCgcagCGggcccgaggcgcggaGCGGCCc -3'
miRNA:   3'- cauagaCUGCCGCGUCGa---GC---------------UGUUGG- -5'
31161 5' -53 NC_006560.1 + 3216 0.7 0.855952
Target:  5'- --cUCgagGGCGGCgGCGGCgggCGGCGGCg -3'
miRNA:   3'- cauAGa--CUGCCG-CGUCGa--GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 3588 0.67 0.952716
Target:  5'- ---gCUGcgggccagcaGCGGCGCGGCggcgcCGGCGACg -3'
miRNA:   3'- cauaGAC----------UGCCGCGUCGa----GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 3641 0.66 0.97031
Target:  5'- -----cGGCGGCGaCGGCggccUCGGCGccGCCg -3'
miRNA:   3'- cauagaCUGCCGC-GUCG----AGCUGU--UGG- -5'
31161 5' -53 NC_006560.1 + 3710 0.76 0.55232
Target:  5'- -cGUCgcgcaccaGGCGCAGCUCGcGCAGCCa -3'
miRNA:   3'- caUAGacug----CCGCGUCGAGC-UGUUGG- -5'
31161 5' -53 NC_006560.1 + 3764 0.67 0.960436
Target:  5'- -----cGGCGGCGCcGCgCGGCGggACCg -3'
miRNA:   3'- cauagaCUGCCGCGuCGaGCUGU--UGG- -5'
31161 5' -53 NC_006560.1 + 3788 0.66 0.97317
Target:  5'- -----cGGCGcGCGCGGC-CGcCAGCCc -3'
miRNA:   3'- cauagaCUGC-CGCGUCGaGCuGUUGG- -5'
31161 5' -53 NC_006560.1 + 3856 0.74 0.656132
Target:  5'- ----aUGACGGCGCGGCa-GACcGCCa -3'
miRNA:   3'- cauagACUGCCGCGUCGagCUGuUGG- -5'
31161 5' -53 NC_006560.1 + 3887 0.66 0.97031
Target:  5'- -----cGGCGGCGuCGGCggcgUCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCGC-GUCG----AGCUGUUGg -5'
31161 5' -53 NC_006560.1 + 3938 0.67 0.960436
Target:  5'- -----gGGCGGCGCcGCggUCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCGCGuCG--AGCUGUUGg -5'
31161 5' -53 NC_006560.1 + 3973 0.7 0.878744
Target:  5'- -----aGGCGGCGCuGCgCGGCGACa -3'
miRNA:   3'- cauagaCUGCCGCGuCGaGCUGUUGg -5'
31161 5' -53 NC_006560.1 + 4046 0.71 0.804884
Target:  5'- -----cGGCGGCGCGGCgccggccgCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCGCGUCGa-------GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 4699 0.68 0.939339
Target:  5'- -----cGGCGGCGCGcGCgCGGCGGCg -3'
miRNA:   3'- cauagaCUGCCGCGU-CGaGCUGUUGg -5'
31161 5' -53 NC_006560.1 + 4745 0.69 0.905915
Target:  5'- -cGUCUcGGCGGCggcccGCGGCggCGGCGGCg -3'
miRNA:   3'- caUAGA-CUGCCG-----CGUCGa-GCUGUUGg -5'
31161 5' -53 NC_006560.1 + 4873 0.69 0.892805
Target:  5'- -cGUCgacGGCGGCgGCGGCgccggCGGgGGCCg -3'
miRNA:   3'- caUAGa--CUGCCG-CGUCGa----GCUgUUGG- -5'
31161 5' -53 NC_006560.1 + 5107 0.75 0.62482
Target:  5'- -gGUCggcGGgGGCGCGGCgUCGAUGACCc -3'
miRNA:   3'- caUAGa--CUgCCGCGUCG-AGCUGUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.