miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31163 3' -60.2 NC_006560.1 + 29780 0.66 0.755934
Target:  5'- gGCCGcGggcccccucucccccGCCCC-CGCCCcgcgAGGUCUGCg -3'
miRNA:   3'- -CGGCaCa--------------UGGGGuGCGGG----UCCAGGUG- -5'
31163 3' -60.2 NC_006560.1 + 66929 0.66 0.755004
Target:  5'- cGCCGcGgcCCCCGC-CCCGGGgcgggCCu- -3'
miRNA:   3'- -CGGCaCauGGGGUGcGGGUCCa----GGug -5'
31163 3' -60.2 NC_006560.1 + 37158 0.66 0.755004
Target:  5'- cUCGcGUcCCCCACGCCCcccccGGGUCaguuCGCg -3'
miRNA:   3'- cGGCaCAuGGGGUGCGGG-----UCCAG----GUG- -5'
31163 3' -60.2 NC_006560.1 + 64154 0.66 0.755004
Target:  5'- gGCCGgcggGU-CCCCAgGCCCAGcaUgGCg -3'
miRNA:   3'- -CGGCa---CAuGGGGUgCGGGUCcaGgUG- -5'
31163 3' -60.2 NC_006560.1 + 72698 0.66 0.755004
Target:  5'- cGCCG---GCCCC-CGCCCcGGuUCCGg -3'
miRNA:   3'- -CGGCacaUGGGGuGCGGGuCC-AGGUg -5'
31163 3' -60.2 NC_006560.1 + 34321 0.66 0.755004
Target:  5'- gGCCGcc-GCCCCccgguACGCCUGGGUCgAg -3'
miRNA:   3'- -CGGCacaUGGGG-----UGCGGGUCCAGgUg -5'
31163 3' -60.2 NC_006560.1 + 79477 0.66 0.755004
Target:  5'- gGCgCGUGaGCCCCccgcgGCGCCCGcGccgCCGCg -3'
miRNA:   3'- -CG-GCACaUGGGG-----UGCGGGUcCa--GGUG- -5'
31163 3' -60.2 NC_006560.1 + 142426 0.66 0.755004
Target:  5'- cCCGg--GCCCCGcCGCCCGGcGcggcggCCGCg -3'
miRNA:   3'- cGGCacaUGGGGU-GCGGGUC-Ca-----GGUG- -5'
31163 3' -60.2 NC_006560.1 + 54767 0.66 0.755004
Target:  5'- gGCgCGag-GCCCCACGCCgcgCGGGgcaCCGCc -3'
miRNA:   3'- -CG-GCacaUGGGGUGCGG---GUCCa--GGUG- -5'
31163 3' -60.2 NC_006560.1 + 52702 0.66 0.755004
Target:  5'- gGCgCGg--GCCCCguucaagagcaGCGCCCA-GUCCGCc -3'
miRNA:   3'- -CG-GCacaUGGGG-----------UGCGGGUcCAGGUG- -5'
31163 3' -60.2 NC_006560.1 + 91607 0.66 0.749403
Target:  5'- gGCgGUGUACCaggaCCugGCCCugagccagugccacgGGGUCUuCg -3'
miRNA:   3'- -CGgCACAUGG----GGugCGGG---------------UCCAGGuG- -5'
31163 3' -60.2 NC_006560.1 + 82421 0.66 0.74565
Target:  5'- gGCCGcGUcCCCCcCGgCCccGUCCGCg -3'
miRNA:   3'- -CGGCaCAuGGGGuGCgGGucCAGGUG- -5'
31163 3' -60.2 NC_006560.1 + 33347 0.66 0.74565
Target:  5'- cGCCGcg-GCCCCgcggccgucucGCGCCCgcggcGGGgCCGCg -3'
miRNA:   3'- -CGGCacaUGGGG-----------UGCGGG-----UCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 41258 0.66 0.74565
Target:  5'- cCCGUuccucGCgCCCACGCUCAGGgCCAg -3'
miRNA:   3'- cGGCAca---UG-GGGUGCGGGUCCaGGUg -5'
31163 3' -60.2 NC_006560.1 + 6456 0.66 0.74565
Target:  5'- cGCCGgcccuccucGCUCCGCGCCCAccgcccGGgaacgCCGCg -3'
miRNA:   3'- -CGGCaca------UGGGGUGCGGGU------CCa----GGUG- -5'
31163 3' -60.2 NC_006560.1 + 103007 0.66 0.74565
Target:  5'- uCUGgaGUACCCCgccuccGCGCCC-GGUCgACg -3'
miRNA:   3'- cGGCa-CAUGGGG------UGCGGGuCCAGgUG- -5'
31163 3' -60.2 NC_006560.1 + 70199 0.66 0.74565
Target:  5'- cGCCG---ACCUCGuCGCCCGGG-CCGa -3'
miRNA:   3'- -CGGCacaUGGGGU-GCGGGUCCaGGUg -5'
31163 3' -60.2 NC_006560.1 + 19983 0.66 0.74565
Target:  5'- cGCCGcagGUACggCAgGUCCGGGcUCCACu -3'
miRNA:   3'- -CGGCa--CAUGggGUgCGGGUCC-AGGUG- -5'
31163 3' -60.2 NC_006560.1 + 36207 0.66 0.744709
Target:  5'- gGCCGggGUccagcggGCCCCACGCCCcucgagCUACu -3'
miRNA:   3'- -CGGCa-CA-------UGGGGUGCGGGucca--GGUG- -5'
31163 3' -60.2 NC_006560.1 + 84550 0.66 0.744709
Target:  5'- cGCCGUcGUGCgCUCGCucuccguGCCCcuGGUCCGa -3'
miRNA:   3'- -CGGCA-CAUG-GGGUG-------CGGGu-CCAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.