miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31163 3' -60.2 NC_006560.1 + 4901 0.66 0.71706
Target:  5'- gGCCGcGUcgcGCUCgGgGUCCGGGUCCGg -3'
miRNA:   3'- -CGGCaCA---UGGGgUgCGGGUCCAGGUg -5'
31163 3' -60.2 NC_006560.1 + 79859 0.66 0.726669
Target:  5'- aGCCGggccGCCCC-CGCCCccG-CCACg -3'
miRNA:   3'- -CGGCaca-UGGGGuGCGGGucCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 5180 0.66 0.70641
Target:  5'- gGCCGcGgcgacggcgGCCCCgacggcggggacaGCGCCCGGGccgucuccUCCACc -3'
miRNA:   3'- -CGGCaCa--------UGGGG-------------UGCGGGUCC--------AGGUG- -5'
31163 3' -60.2 NC_006560.1 + 69786 0.66 0.725712
Target:  5'- cGCCGUGcucuccgACCCCggguucgucccguACGCCCuGGcCCuCg -3'
miRNA:   3'- -CGGCACa------UGGGG-------------UGCGGGuCCaGGuG- -5'
31163 3' -60.2 NC_006560.1 + 51769 0.66 0.726669
Target:  5'- gGCCGgugGCCUCGCGCCCcccGG-CgGCg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGGGu--CCaGgUG- -5'
31163 3' -60.2 NC_006560.1 + 87143 0.66 0.707382
Target:  5'- cGCCGaucACCCCGCGCUgcgCGGGcCCGg -3'
miRNA:   3'- -CGGCacaUGGGGUGCGG---GUCCaGGUg -5'
31163 3' -60.2 NC_006560.1 + 67827 0.66 0.707382
Target:  5'- aGCCGgGUcgcgucccCCCCGacgccaGCCCGGG-CCGCg -3'
miRNA:   3'- -CGGCaCAu-------GGGGUg-----CGGGUCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 43730 0.66 0.71706
Target:  5'- cGCCGggcgcGUACUCCGCGgCCGccgcGGUgCGCc -3'
miRNA:   3'- -CGGCa----CAUGGGGUGCgGGU----CCAgGUG- -5'
31163 3' -60.2 NC_006560.1 + 43321 0.66 0.708352
Target:  5'- cGCCGcucgacguagaggggGaACCCCGCgGCCgCGGGcCCGCg -3'
miRNA:   3'- -CGGCa--------------CaUGGGGUG-CGG-GUCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 92483 0.66 0.707382
Target:  5'- cCCGUGaugGCCgCGCGCCCcauGGUCgUGCu -3'
miRNA:   3'- cGGCACa--UGGgGUGCGGGu--CCAG-GUG- -5'
31163 3' -60.2 NC_006560.1 + 123790 0.66 0.726669
Target:  5'- cGUCGgugaccGUGCCCCGCgaGCUgAGG-CCGCu -3'
miRNA:   3'- -CGGCa-----CAUGGGGUG--CGGgUCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 92770 0.66 0.71706
Target:  5'- cGCCGUGUucgucGCCgCCGucaagaGCCUGGGgaaCCGCa -3'
miRNA:   3'- -CGGCACA-----UGG-GGUg-----CGGGUCCa--GGUG- -5'
31163 3' -60.2 NC_006560.1 + 1514 0.66 0.71706
Target:  5'- aGCgCGUGcaucggGCCCCgggcgcGCGCCC-GG-CCACg -3'
miRNA:   3'- -CG-GCACa-----UGGGG------UGCGGGuCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 93425 0.66 0.707382
Target:  5'- cCCccGUACCCaCACGCCCAcguugcGGUCUucACa -3'
miRNA:   3'- cGGcaCAUGGG-GUGCGGGU------CCAGG--UG- -5'
31163 3' -60.2 NC_006560.1 + 113373 0.66 0.726669
Target:  5'- gGCCGcGUcgucgcggacgGCCCCGCGCUgcugacgcugCAGGUCguCg -3'
miRNA:   3'- -CGGCaCA-----------UGGGGUGCGG----------GUCCAGguG- -5'
31163 3' -60.2 NC_006560.1 + 84467 0.66 0.726669
Target:  5'- cGCCGgcugGaGCCCaGCGCCCGcgagcgcgagcGGUaCCGCg -3'
miRNA:   3'- -CGGCa---CaUGGGgUGCGGGU-----------CCA-GGUG- -5'
31163 3' -60.2 NC_006560.1 + 22610 0.66 0.71706
Target:  5'- cCCGg--ACCCCGCGCCgccgccgccgCGGG-CCGCc -3'
miRNA:   3'- cGGCacaUGGGGUGCGG----------GUCCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 102075 0.66 0.707382
Target:  5'- gGCCGaguaGUGCCgCugGCCCAcguacagccGG-CCGCa -3'
miRNA:   3'- -CGGCa---CAUGGgGugCGGGU---------CCaGGUG- -5'
31163 3' -60.2 NC_006560.1 + 29780 0.66 0.755934
Target:  5'- gGCCGcGggcccccucucccccGCCCC-CGCCCcgcgAGGUCUGCg -3'
miRNA:   3'- -CGGCaCa--------------UGGGGuGCGGG----UCCAGGUG- -5'
31163 3' -60.2 NC_006560.1 + 4495 0.66 0.707382
Target:  5'- cGCCccaGaGCCCCGggcggcuguCGCCCAGG-CCGCc -3'
miRNA:   3'- -CGGca-CaUGGGGU---------GCGGGUCCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.