miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31163 5' -53.7 NC_006560.1 + 130109 0.66 0.969458
Target:  5'- gGGCUgGCGUGGGCcgaGGAGagcgUCuGCGCc -3'
miRNA:   3'- gCCGA-CGCACUCGca-CUUCa---AG-UGCG- -5'
31163 5' -53.7 NC_006560.1 + 73651 0.66 0.969458
Target:  5'- aCGcGCUgGCGagGAGCGUGGacgcGGUg-GCGCg -3'
miRNA:   3'- -GC-CGA-CGCa-CUCGCACU----UCAagUGCG- -5'
31163 5' -53.7 NC_006560.1 + 99360 0.66 0.969458
Target:  5'- cCGGCUggGCGUacugGGGCG-GggGcgcccgCGCGCg -3'
miRNA:   3'- -GCCGA--CGCA----CUCGCaCuuCaa----GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 148253 0.66 0.966351
Target:  5'- gCGGCUGCG-GA-CGcGGAGUa-GCGCg -3'
miRNA:   3'- -GCCGACGCaCUcGCaCUUCAagUGCG- -5'
31163 5' -53.7 NC_006560.1 + 25782 0.66 0.966351
Target:  5'- cCGGCcGCGUcGAuCGgagGAGGgggCGCGCg -3'
miRNA:   3'- -GCCGaCGCA-CUcGCa--CUUCaa-GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 91121 0.66 0.965048
Target:  5'- gCGGCUGCG-GGGCcgccacccccGGUUCGCGa -3'
miRNA:   3'- -GCCGACGCaCUCGcacu------UCAAGUGCg -5'
31163 5' -53.7 NC_006560.1 + 85778 0.66 0.963028
Target:  5'- gCGGCUcaGCucggagGUGAGCacGAAG-UCGCGCa -3'
miRNA:   3'- -GCCGA--CG------CACUCGcaCUUCaAGUGCG- -5'
31163 5' -53.7 NC_006560.1 + 14839 0.66 0.963028
Target:  5'- aGGUgcgGCGggggGAGCGUGgcGgcCGgGCg -3'
miRNA:   3'- gCCGa--CGCa---CUCGCACuuCaaGUgCG- -5'
31163 5' -53.7 NC_006560.1 + 147553 0.66 0.963028
Target:  5'- uGGCccaUGCGggcGGGCGgGGAGagggCGCGCa -3'
miRNA:   3'- gCCG---ACGCa--CUCGCaCUUCaa--GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 101716 0.66 0.959115
Target:  5'- gCGGUUGaccuCGUcGGCGUGGgcccggccgccggGGUUCACGUc -3'
miRNA:   3'- -GCCGAC----GCAcUCGCACU-------------UCAAGUGCG- -5'
31163 5' -53.7 NC_006560.1 + 15063 0.66 0.955709
Target:  5'- aCGGCgucgGUGggGGGCG-GggGcUCugGCc -3'
miRNA:   3'- -GCCGa---CGCa-CUCGCaCuuCaAGugCG- -5'
31163 5' -53.7 NC_006560.1 + 130413 0.66 0.955709
Target:  5'- uGGCgGCccugGAGCGcGAGGUgggcggCGCGCc -3'
miRNA:   3'- gCCGaCGca--CUCGCaCUUCAa-----GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 139983 0.66 0.955709
Target:  5'- aGGCUGgGggGAGCG-GggGUgccgggccUgACGCu -3'
miRNA:   3'- gCCGACgCa-CUCGCaCuuCA--------AgUGCG- -5'
31163 5' -53.7 NC_006560.1 + 4884 0.66 0.955709
Target:  5'- gCGGCgGCGccGGCG-GggGccgcgUCGCGCu -3'
miRNA:   3'- -GCCGaCGCacUCGCaCuuCa----AGUGCG- -5'
31163 5' -53.7 NC_006560.1 + 107963 0.66 0.955709
Target:  5'- aGGUgGCGUGGGCcggGGAGggCgGCGCc -3'
miRNA:   3'- gCCGaCGCACUCGca-CUUCaaG-UGCG- -5'
31163 5' -53.7 NC_006560.1 + 116763 0.67 0.947464
Target:  5'- aGGCcGCGUGuuGGCGgUGAAGgcggggucCACGUa -3'
miRNA:   3'- gCCGaCGCAC--UCGC-ACUUCaa------GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 139682 0.67 0.942985
Target:  5'- gCGGCgacGgGUGAGCGU-AGGUgaggACGCg -3'
miRNA:   3'- -GCCGa--CgCACUCGCAcUUCAag--UGCG- -5'
31163 5' -53.7 NC_006560.1 + 149767 0.67 0.942985
Target:  5'- gGGC-GCGgGGGCGUcGAGGcgcCACGCc -3'
miRNA:   3'- gCCGaCGCaCUCGCA-CUUCaa-GUGCG- -5'
31163 5' -53.7 NC_006560.1 + 97189 0.67 0.942985
Target:  5'- gCGGaCUGCGUcGGGCGcGAGGccCGCGa -3'
miRNA:   3'- -GCC-GACGCA-CUCGCaCUUCaaGUGCg -5'
31163 5' -53.7 NC_006560.1 + 85590 0.67 0.942985
Target:  5'- gCGGCggGCGcG-GCGUcGAGcUCGCGCa -3'
miRNA:   3'- -GCCGa-CGCaCuCGCAcUUCaAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.