Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31165 | 5' | -59.3 | NC_006560.1 | + | 39445 | 0.66 | 0.804001 |
Target: 5'- aCCAGCGccacggcgcugcgcGGUcggcgccgccGGCGCgGCGAcggggccucgcCGUCGUCGu -3' miRNA: 3'- -GGUCGU--------------CCA----------CCGCG-CGCU-----------GCAGCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 55820 | 0.66 | 0.79797 |
Target: 5'- aCCAGCGGaaGGCG-GCGcCGUCGccCGg -3' miRNA: 3'- -GGUCGUCcaCCGCgCGCuGCAGCa-GC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 34517 | 0.66 | 0.79797 |
Target: 5'- gCCGGCAcGG-GGCGCGCGGgGgcaGagGg -3' miRNA: 3'- -GGUCGU-CCaCCGCGCGCUgCag-CagC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 93998 | 0.66 | 0.79797 |
Target: 5'- -gGGCcGG-GGCGgGgGACGUCG-CGg -3' miRNA: 3'- ggUCGuCCaCCGCgCgCUGCAGCaGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 143691 | 0.66 | 0.790117 |
Target: 5'- -aGGCAGGggagGGgGCGgGACGaggcgagagcgggcgCGUCGg -3' miRNA: 3'- ggUCGUCCa---CCgCGCgCUGCa--------------GCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 16246 | 0.66 | 0.789237 |
Target: 5'- gCGGgGGGUGGCGUagcaaugcgagGCGGCG-CGcgCGg -3' miRNA: 3'- gGUCgUCCACCGCG-----------CGCUGCaGCa-GC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 147684 | 0.66 | 0.789237 |
Target: 5'- cUCGGCcucGGcGcGCGUGCGGgGUCGUUGa -3' miRNA: 3'- -GGUCGu--CCaC-CGCGCGCUgCAGCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 53207 | 0.66 | 0.789237 |
Target: 5'- cCCAGUAccugcugaacgcGGcccUGGCGgGCuACGUCGUCu -3' miRNA: 3'- -GGUCGU------------CC---ACCGCgCGcUGCAGCAGc -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 61774 | 0.66 | 0.789237 |
Target: 5'- gUAGCAcgacgcGGUGGUGUGCacGGCcUCGUCGc -3' miRNA: 3'- gGUCGU------CCACCGCGCG--CUGcAGCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 43425 | 0.66 | 0.789237 |
Target: 5'- gCCGGgGGcGUcGGCGCGCGGCa-CGUgCGg -3' miRNA: 3'- -GGUCgUC-CA-CCGCGCGCUGcaGCA-GC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 115116 | 0.66 | 0.783934 |
Target: 5'- gCGGCAGcUGGCGCuggcCGACGuggcccacgagucguUCGUCGc -3' miRNA: 3'- gGUCGUCcACCGCGc---GCUGC---------------AGCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 137250 | 0.66 | 0.780373 |
Target: 5'- --cGCGGGcGGCGgGCGACGcCGa-- -3' miRNA: 3'- gguCGUCCaCCGCgCGCUGCaGCagc -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 10372 | 0.66 | 0.780373 |
Target: 5'- -gAGUuGGgGGCGCGCGACacCGUCa -3' miRNA: 3'- ggUCGuCCaCCGCGCGCUGcaGCAGc -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 10240 | 0.66 | 0.780373 |
Target: 5'- gCGGCGGG-GGCGCGgGuCG-CGgCGg -3' miRNA: 3'- gGUCGUCCaCCGCGCgCuGCaGCaGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 121062 | 0.67 | 0.771384 |
Target: 5'- aCCAGgAagacGGUGGCGCGCugucggaaguGACGcacggccgCGUCGc -3' miRNA: 3'- -GGUCgU----CCACCGCGCG----------CUGCa-------GCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 81196 | 0.67 | 0.771384 |
Target: 5'- --cGCGGGUgGGgGCGCGACGgCGa-- -3' miRNA: 3'- gguCGUCCA-CCgCGCGCUGCaGCagc -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 99125 | 0.67 | 0.771384 |
Target: 5'- aCCAGCGcGG-GGUGCGUcucGGgGUCGcCGg -3' miRNA: 3'- -GGUCGU-CCaCCGCGCG---CUgCAGCaGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 80970 | 0.67 | 0.762281 |
Target: 5'- gCCAGCGuGUGGUucgcgugcGCGCGACacaUGUCGg -3' miRNA: 3'- -GGUCGUcCACCG--------CGCGCUGca-GCAGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 4691 | 0.67 | 0.762281 |
Target: 5'- cCCGGCcacGGcGGCGCGCGcGCGgcggCGcUCGc -3' miRNA: 3'- -GGUCGu--CCaCCGCGCGC-UGCa---GC-AGC- -5' |
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31165 | 5' | -59.3 | NC_006560.1 | + | 9097 | 0.67 | 0.762281 |
Target: 5'- aCGGCGGaGcGcGCGCGCGGCG-CG-CGg -3' miRNA: 3'- gGUCGUC-CaC-CGCGCGCUGCaGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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