miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 2293 0.66 0.575728
Target:  5'- gCGGCGgaagUCG-GGCGCGcCGGCGGcGGCc -3'
miRNA:   3'- -GCCGCg---AGCgCUGCGU-GUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 83957 0.66 0.575728
Target:  5'- aGGCGCagCcCGACG-ACGGCG-GGCGg -3'
miRNA:   3'- gCCGCGa-GcGCUGCgUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 141759 0.66 0.556689
Target:  5'- -cGCGCcCGCGuugGCGCGCGGCGaGaGCGg -3'
miRNA:   3'- gcCGCGaGCGC---UGCGUGUCGC-CcCGC- -5'
31167 3' -63.8 NC_006560.1 + 16536 0.66 0.565236
Target:  5'- gCGGCGCUggggCGCcGCGCGCcaucgaaGGUGaGGGCc -3'
miRNA:   3'- -GCCGCGA----GCGcUGCGUG-------UCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 5173 0.66 0.546294
Target:  5'- gGGgGCgggcCGCGGCG-ACGGCGGccccgacGGCGg -3'
miRNA:   3'- gCCgCGa---GCGCUGCgUGUCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 57472 0.66 0.583386
Target:  5'- cCGGCGaugacgccgagCGCGACGagaaACAGCgaccggGGGGCc -3'
miRNA:   3'- -GCCGCga---------GCGCUGCg---UGUCG------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 26367 0.66 0.547236
Target:  5'- gCGGgGCggaGaCGGCGCccCGGcCGGGGCGc -3'
miRNA:   3'- -GCCgCGag-C-GCUGCGu-GUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 73633 0.66 0.547236
Target:  5'- aGGUGCgcggCGCccugGACGCGCuGGCGaGGaGCGu -3'
miRNA:   3'- gCCGCGa---GCG----CUGCGUG-UCGC-CC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 74096 0.66 0.553848
Target:  5'- gCGGCcugGCUgGCGuCGCugGGCgacgccgcgggccaGGGGCu -3'
miRNA:   3'- -GCCG---CGAgCGCuGCGugUCG--------------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 45253 0.66 0.566188
Target:  5'- gGGCGUcUGUGGCGCgu-GCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCUGCGuguCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 23544 0.66 0.575728
Target:  5'- aGGCGCUCGuCGA-GgGCuuCGGcGGCGa -3'
miRNA:   3'- gCCGCGAGC-GCUgCgUGucGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 11912 0.66 0.566188
Target:  5'- aCGGCGUcCGCGAagcCGCgggcccGCAGgaGGGGCc -3'
miRNA:   3'- -GCCGCGaGCGCU---GCG------UGUCg-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 148250 0.66 0.556689
Target:  5'- aCGGCgGCUgCG-GACGCGgAguagcGCGGGGCc -3'
miRNA:   3'- -GCCG-CGA-GCgCUGCGUgU-----CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 56371 0.66 0.566188
Target:  5'- uCGGCcuCUCGCG-CGCGgGGCcGGGGa- -3'
miRNA:   3'- -GCCGc-GAGCGCuGCGUgUCG-CCCCgc -5'
31167 3' -63.8 NC_006560.1 + 17067 0.66 0.575728
Target:  5'- uGGCGCUCagcagcuggcggGCGACcgccgugaccuGCGCgaGGCucagGGGGCGg -3'
miRNA:   3'- gCCGCGAG------------CGCUG-----------CGUG--UCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 134678 0.66 0.556689
Target:  5'- cCGGCGgggUCGCGGacccgccacuCGcCGCGGCGGGGg- -3'
miRNA:   3'- -GCCGCg--AGCGCU----------GC-GUGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 59021 0.66 0.556689
Target:  5'- cCGGCGCgcuggccgccgCGCagGGCGCcCAGCaGGGaGCGc -3'
miRNA:   3'- -GCCGCGa----------GCG--CUGCGuGUCG-CCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 25108 0.66 0.556689
Target:  5'- aGGCGCacucgcacCGCGccuGCGCGCGcUGGGGCc -3'
miRNA:   3'- gCCGCGa-------GCGC---UGCGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 115058 0.66 0.556689
Target:  5'- cCGaCGC-CGCGGCGCuGCAGCGcugcgagggccGGGUGg -3'
miRNA:   3'- -GCcGCGaGCGCUGCG-UGUCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 32890 0.66 0.575728
Target:  5'- aGGcCGCgggGgGGCGCGCccGCGGGGUa -3'
miRNA:   3'- gCC-GCGag-CgCUGCGUGu-CGCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.