miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 108748 0.66 0.585304
Target:  5'- aGGCGCUCcagggaGACGgGCAGCcgcgGGaGGUGg -3'
miRNA:   3'- gCCGCGAGcg----CUGCgUGUCG----CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 81193 0.66 0.584345
Target:  5'- uGGCGCgggugggggCGCGACgGCgaccgggaggaggACGGCggcggaggGGGGCGa -3'
miRNA:   3'- gCCGCGa--------GCGCUG-CG-------------UGUCG--------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 149206 0.66 0.566188
Target:  5'- uGGCGg-CGagGGgGCGCGGCccGGGGCGg -3'
miRNA:   3'- gCCGCgaGCg-CUgCGUGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 82055 0.66 0.585304
Target:  5'- aGGCcCUCGaagGAgucCGCGCGGCGGucGGCGu -3'
miRNA:   3'- gCCGcGAGCg--CU---GCGUGUCGCC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 116642 0.66 0.584345
Target:  5'- gCGGCGCagcgCGCGAUGUcguCGGCGgccgagcccgugaGGGCc -3'
miRNA:   3'- -GCCGCGa---GCGCUGCGu--GUCGC-------------CCCGc -5'
31167 3' -63.8 NC_006560.1 + 11912 0.66 0.566188
Target:  5'- aCGGCGUcCGCGAagcCGCgggcccGCAGgaGGGGCc -3'
miRNA:   3'- -GCCGCGaGCGCU---GCG------UGUCg-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 45763 0.66 0.575728
Target:  5'- aGGgGUUgGCGugGgGgGGCGcGGGCu -3'
miRNA:   3'- gCCgCGAgCGCugCgUgUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 4 0.66 0.556689
Target:  5'- -cGCGC-CGCGuuuCcCGGCGGGGCGg -3'
miRNA:   3'- gcCGCGaGCGCugcGuGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 65410 0.66 0.585304
Target:  5'- gGGCGCUU-CGGCGgaAC-GCGGGaGCGg -3'
miRNA:   3'- gCCGCGAGcGCUGCg-UGuCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 3559 0.66 0.585304
Target:  5'- gCGGCGC-CGaCGgaGCGCACcugccGCGGGcuGCGg -3'
miRNA:   3'- -GCCGCGaGC-GC--UGCGUGu----CGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 139044 0.66 0.566188
Target:  5'- gGGgGCUCGCGGugucccggccCGUGCcgGGCccgGGGGCGc -3'
miRNA:   3'- gCCgCGAGCGCU----------GCGUG--UCG---CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 138798 0.66 0.563334
Target:  5'- aGGCGggUG-GACGUGCGGCgccuggggaccaccGGGGCGa -3'
miRNA:   3'- gCCGCgaGCgCUGCGUGUCG--------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 1980 0.66 0.547236
Target:  5'- gCGGgGCUCGgGGCcggGC-CAGCuccaGGGCGg -3'
miRNA:   3'- -GCCgCGAGCgCUG---CGuGUCGc---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26821 0.66 0.547236
Target:  5'- gGGCGCgcggGgGACGC-CGGggaccCGGGGCGc -3'
miRNA:   3'- gCCGCGag--CgCUGCGuGUC-----GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 34496 0.66 0.593949
Target:  5'- cCGGgGgUCGCGGCuccggagGC-CGGCacGGGGCGc -3'
miRNA:   3'- -GCCgCgAGCGCUG-------CGuGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 105847 0.66 0.547236
Target:  5'- -cGCGCUCGUG-CGCGCGcGCuacGGGCu -3'
miRNA:   3'- gcCGCGAGCGCuGCGUGU-CGc--CCCGc -5'
31167 3' -63.8 NC_006560.1 + 16536 0.66 0.565236
Target:  5'- gCGGCGCUggggCGCcGCGCGCcaucgaaGGUGaGGGCc -3'
miRNA:   3'- -GCCGCGA----GCGcUGCGUG-------UCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 5173 0.66 0.546294
Target:  5'- gGGgGCgggcCGCGGCG-ACGGCGGccccgacGGCGg -3'
miRNA:   3'- gCCgCGa---GCGCUGCgUGUCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 57676 0.66 0.556689
Target:  5'- aGGCGCgccCGCcGCGCGUGGgugGGGGCGa -3'
miRNA:   3'- gCCGCGa--GCGcUGCGUGUCg--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 143588 0.66 0.547236
Target:  5'- gGGgGUUCGCGA-GCGagaGGCGuGGCGg -3'
miRNA:   3'- gCCgCGAGCGCUgCGUg--UCGCcCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.