miRNA display CGI


Results 101 - 120 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 34991 0.67 0.537835
Target:  5'- gGGCGcCUCGgGGcCGCGggcCGGCcGGGCGc -3'
miRNA:   3'- gCCGC-GAGCgCU-GCGU---GUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 22925 0.67 0.527559
Target:  5'- cCGGCGCUacgaggcCGcCGGCGCGCccgccccGUGuGGGCGc -3'
miRNA:   3'- -GCCGCGA-------GC-GCUGCGUGu------CGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 53467 0.67 0.52849
Target:  5'- uCGGCGC-CGCccGAgGcCGCGGCGGcGcGCGa -3'
miRNA:   3'- -GCCGCGaGCG--CUgC-GUGUCGCC-C-CGC- -5'
31167 3' -63.8 NC_006560.1 + 40679 0.67 0.541589
Target:  5'- cCGGCGUaguucagcagguacgUCGCgGGCGC-CAccaucuugugcGCGGGGCu -3'
miRNA:   3'- -GCCGCG---------------AGCG-CUGCGuGU-----------CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 3464 0.67 0.49176
Target:  5'- -uGCGCUUGCGGgcCGCGCGgGCGGcgucGGCGn -3'
miRNA:   3'- gcCGCGAGCGCU--GCGUGU-CGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 54993 0.67 0.52849
Target:  5'- aGGC-CUCG-GGCGgAUcgagggGGCGGGGCGc -3'
miRNA:   3'- gCCGcGAGCgCUGCgUG------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 73576 0.67 0.52849
Target:  5'- aGGCcCUCGCGGgGUucGCc-CGGGGCGa -3'
miRNA:   3'- gCCGcGAGCGCUgCG--UGucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 9642 0.67 0.509987
Target:  5'- gGGUGggUGCGGC-CGgAGgGGGGCGg -3'
miRNA:   3'- gCCGCgaGCGCUGcGUgUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 25842 0.67 0.509987
Target:  5'- aCGGCGUggcCG-GGCGCGCGccCGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCgCUGCGUGUc-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 131498 0.67 0.509987
Target:  5'- aCGGCGUcgUCGCGGCcgucgggcugcgGCucgagGCGGCGGccGGCGa -3'
miRNA:   3'- -GCCGCG--AGCGCUG------------CG-----UGUCGCC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 57397 0.67 0.532221
Target:  5'- aGG-GC-CGCGGCcaGCGCGGCcgccccggcgaccucGGGGCGg -3'
miRNA:   3'- gCCgCGaGCGCUG--CGUGUCG---------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 76503 0.67 0.509987
Target:  5'- uGGCuggaGCacgCGCGGCGCGuCuuCGGGGCGc -3'
miRNA:   3'- gCCG----CGa--GCGCUGCGU-GucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 93874 0.67 0.500837
Target:  5'- cCGGgGCUgGCGGCGCA-GGCccGGGCc -3'
miRNA:   3'- -GCCgCGAgCGCUGCGUgUCGc-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 110167 0.67 0.509987
Target:  5'- -uGUGCgUCGCGA-GCGCcguGGCGGGGUa -3'
miRNA:   3'- gcCGCG-AGCGCUgCGUG---UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 137619 0.67 0.509987
Target:  5'- aGGUGCgccgGCGGCaCGCGgccGCGGGGCu -3'
miRNA:   3'- gCCGCGag--CGCUGcGUGU---CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 79817 0.67 0.52849
Target:  5'- gGGCGCg-GUGGCGCcggGCGGCGauuucGGCGg -3'
miRNA:   3'- gCCGCGagCGCUGCG---UGUCGCc----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 33857 0.67 0.52849
Target:  5'- gGGCGCgCGCG-CGUguguguauACGGgGGGGgGg -3'
miRNA:   3'- gCCGCGaGCGCuGCG--------UGUCgCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 26943 0.67 0.537835
Target:  5'- gCGGgGC-CGCGGagGCcggggaaccccACAgGCGGGGCGg -3'
miRNA:   3'- -GCCgCGaGCGCUg-CG-----------UGU-CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 12319 0.67 0.49176
Target:  5'- aGGCGCcccaUCGgGGaccggagGCACcucggggcuGGCGGGGCGg -3'
miRNA:   3'- gCCGCG----AGCgCUg------CGUG---------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 82113 0.67 0.49176
Target:  5'- uGGCGgUCGCG-CGgGgAGgGGGGgGg -3'
miRNA:   3'- gCCGCgAGCGCuGCgUgUCgCCCCgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.