miRNA display CGI


Results 121 - 140 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 146530 0.67 0.519206
Target:  5'- cCGGCGCgUCGgGggGCGCggGCAGCGaGGCc -3'
miRNA:   3'- -GCCGCG-AGCgC--UGCG--UGUCGCcCCGc -5'
31167 3' -63.8 NC_006560.1 + 22925 0.67 0.527559
Target:  5'- cCGGCGCUacgaggcCGcCGGCGCGCccgccccGUGuGGGCGc -3'
miRNA:   3'- -GCCGCGA-------GC-GCUGCGUGu------CGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 125034 0.67 0.519206
Target:  5'- cCGGCgGCUgGUGGCGC--GGCGGucgccGGCGg -3'
miRNA:   3'- -GCCG-CGAgCGCUGCGugUCGCC-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 74282 0.67 0.519206
Target:  5'- gCGGCGUUCGagcccgccgcCGAccaCGCGgcCGGCGGGGaCGa -3'
miRNA:   3'- -GCCGCGAGC----------GCU---GCGU--GUCGCCCC-GC- -5'
31167 3' -63.8 NC_006560.1 + 57397 0.67 0.532221
Target:  5'- aGG-GC-CGCGGCcaGCGCGGCcgccccggcgaccucGGGGCGg -3'
miRNA:   3'- gCCgCGaGCGCUG--CGUGUCG---------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 1490 0.67 0.52849
Target:  5'- aGGCGC--GCGgcccACGC-CGGCGGGaGCGc -3'
miRNA:   3'- gCCGCGagCGC----UGCGuGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 13427 0.67 0.537835
Target:  5'- uCGGCGcCUCGaggagGACGCuGCGGCaGGcGCGc -3'
miRNA:   3'- -GCCGC-GAGCg----CUGCG-UGUCGcCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 128481 0.67 0.519206
Target:  5'- gGGCGa-CGUGGC-CAC-GUGGGGCGa -3'
miRNA:   3'- gCCGCgaGCGCUGcGUGuCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26943 0.67 0.537835
Target:  5'- gCGGgGC-CGCGGagGCcggggaaccccACAgGCGGGGCGg -3'
miRNA:   3'- -GCCgCGaGCGCUg-CG-----------UGU-CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 33857 0.67 0.52849
Target:  5'- gGGCGCgCGCG-CGUguguguauACGGgGGGGgGg -3'
miRNA:   3'- gCCGCGaGCGCuGCG--------UGUCgCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 79817 0.67 0.52849
Target:  5'- gGGCGCg-GUGGCGCcggGCGGCGauuucGGCGg -3'
miRNA:   3'- gCCGCGagCGCUGCG---UGUCGCc----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 33205 0.67 0.537835
Target:  5'- aGGCgGC-CGCGGgGCAgA-CGGGGCa -3'
miRNA:   3'- gCCG-CGaGCGCUgCGUgUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 143369 0.67 0.537835
Target:  5'- cCGGU-CUCGacccaGGCGUACcGgGGGGCGg -3'
miRNA:   3'- -GCCGcGAGCg----CUGCGUGuCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 97356 0.67 0.52849
Target:  5'- gCGGgaGCUCGUccgcgagcaGACGCgGCGGCcggccgGGGGCGa -3'
miRNA:   3'- -GCCg-CGAGCG---------CUGCG-UGUCG------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 55601 0.67 0.52849
Target:  5'- uGGUcgGC-CGCGGCaGCACcGuCGGGGCa -3'
miRNA:   3'- gCCG--CGaGCGCUG-CGUGuC-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 40679 0.67 0.541589
Target:  5'- cCGGCGUaguucagcagguacgUCGCgGGCGC-CAccaucuugugcGCGGGGCu -3'
miRNA:   3'- -GCCGCG---------------AGCG-CUGCGuGU-----------CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 77511 0.67 0.52849
Target:  5'- uGGCGCUgaGCGACGCcCA---GGGCGa -3'
miRNA:   3'- gCCGCGAg-CGCUGCGuGUcgcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 5306 0.67 0.537835
Target:  5'- uCGGcCGC-CGCG-UGCgACGGCGGcGGCc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCG-UGUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 82495 0.67 0.537835
Target:  5'- gCGaGCGCgacaGCaGCGCGCAGuCGGGGa- -3'
miRNA:   3'- -GC-CGCGag--CGcUGCGUGUC-GCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 88936 0.67 0.537835
Target:  5'- gGGCGCgcuGCGAgGCcCGGCcccgaGGGCGg -3'
miRNA:   3'- gCCGCGag-CGCUgCGuGUCGc----CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.