Results 41 - 60 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 78038 | 0.74 | 0.20105 |
Target: 5'- uGGCGC-CGUGGCGCGCGGCcccGGagcuGGCGg -3' miRNA: 3'- gCCGCGaGCGCUGCGUGUCG---CC----CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 14340 | 0.74 | 0.209201 |
Target: 5'- aGGCGC-CGaCGacgagcgggagagaGCGCAUGGUGGGGCGa -3' miRNA: 3'- gCCGCGaGC-GC--------------UGCGUGUCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 50387 | 0.74 | 0.20969 |
Target: 5'- uGGCGUUCgacgaggGCGACuacccggGCGCGGCGgGGGCGg -3' miRNA: 3'- gCCGCGAG-------CGCUG-------CGUGUCGC-CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 33359 | 0.74 | 0.210669 |
Target: 5'- gCGGcCGuCUCGCGcC-CGCGGCGGGGCc -3' miRNA: 3'- -GCC-GC-GAGCGCuGcGUGUCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 95280 | 0.74 | 0.210669 |
Target: 5'- gCGGCGCgcgugcgcuuUCGCGACcugacggcCGCGGCGGGGaCGg -3' miRNA: 3'- -GCCGCG----------AGCGCUGc-------GUGUCGCCCC-GC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 131145 | 0.74 | 0.20105 |
Target: 5'- gCGcGCGCUCGCcccCGCGCGGCucuGGGCGg -3' miRNA: 3'- -GC-CGCGAGCGcu-GCGUGUCGc--CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 74448 | 0.74 | 0.19824 |
Target: 5'- uCGGCGCgCGCGcGCGCGCcaucgaggaccugcuGGCGGaGGCGc -3' miRNA: 3'- -GCCGCGaGCGC-UGCGUG---------------UCGCC-CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 57241 | 0.74 | 0.196386 |
Target: 5'- uCGGCGCgcaCGCGGCGC--GGgGGGGCc -3' miRNA: 3'- -GCCGCGa--GCGCUGCGugUCgCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 42925 | 0.74 | 0.196386 |
Target: 5'- aCGGCGCcgcgguagCGCGGCGC-CGGCuccagccccgcgGGGGCGu -3' miRNA: 3'- -GCCGCGa-------GCGCUGCGuGUCG------------CCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 124749 | 0.74 | 0.191816 |
Target: 5'- uCGGCGCaccgacgacCGCGACGCcgAGgGGGGCGa -3' miRNA: 3'- -GCCGCGa--------GCGCUGCGugUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 147139 | 0.74 | 0.18734 |
Target: 5'- aGGCGCgcgcgcCGCGGCGcCGCcuCGGGGCGc -3' miRNA: 3'- gCCGCGa-----GCGCUGC-GUGucGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 139337 | 0.74 | 0.18734 |
Target: 5'- gGGCGcCUCgGCGGCccGCGCGGgGGGGCc -3' miRNA: 3'- gCCGC-GAG-CGCUG--CGUGUCgCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 120509 | 0.74 | 0.18734 |
Target: 5'- aGGUGgUCGCGGgGC--AGCGGGGCGc -3' miRNA: 3'- gCCGCgAGCGCUgCGugUCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 15275 | 0.73 | 0.225838 |
Target: 5'- gGGCGCggUCGCGGgagccgGCGCGGCGGcGGUGg -3' miRNA: 3'- gCCGCG--AGCGCUg-----CGUGUCGCC-CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 32829 | 0.73 | 0.225318 |
Target: 5'- gGGCGCUCagggccacgcggGCGGCGgGCAGCcccccgggcagagGGGGCa -3' miRNA: 3'- gCCGCGAG------------CGCUGCgUGUCG-------------CCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 84391 | 0.73 | 0.215626 |
Target: 5'- cCGGCucGCcCGCGACG-ACGGCaGGGGCGc -3' miRNA: 3'- -GCCG--CGaGCGCUGCgUGUCG-CCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 146997 | 0.73 | 0.215626 |
Target: 5'- uGGCgGCUCGCGGcCGCGgGGCcaccGGGGCc -3' miRNA: 3'- gCCG-CGAGCGCU-GCGUgUCG----CCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 130530 | 0.73 | 0.215626 |
Target: 5'- uGGCGCcgCGCGGCGC-CGcGCuGGGCGu -3' miRNA: 3'- gCCGCGa-GCGCUGCGuGU-CGcCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 118121 | 0.73 | 0.215626 |
Target: 5'- aGGCGCagcUCGCGGCGCcgGgGGCGGacgcGGCGg -3' miRNA: 3'- gCCGCG---AGCGCUGCG--UgUCGCC----CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 72901 | 0.73 | 0.225838 |
Target: 5'- aGGCGCU-G-GACGCGCuGCGGGaGCGc -3' miRNA: 3'- gCCGCGAgCgCUGCGUGuCGCCC-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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