Results 61 - 80 of 409 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 3496 | 0.73 | 0.247494 |
Target: 5'- uCGGCGUcgGCGGCGUcCAGCagGGGGCGc -3' miRNA: 3'- -GCCGCGagCGCUGCGuGUCG--CCCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 9593 | 0.73 | 0.247494 |
Target: 5'- aGGCGCggcgagcggagCGCGGgGCGCGGCcccuGGGGCc -3' miRNA: 3'- gCCGCGa----------GCGCUgCGUGUCG----CCCCGc -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 67077 | 0.73 | 0.247494 |
Target: 5'- gCGGgGCUgccCGCGGCGCcagAgAGCGcGGGCGg -3' miRNA: 3'- -GCCgCGA---GCGCUGCG---UgUCGC-CCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 94954 | 0.73 | 0.247494 |
Target: 5'- aGGCGCUgCGCcgcgugcuGGCGCGCaucgggGGCGGGcGCGg -3' miRNA: 3'- gCCGCGA-GCG--------CUGCGUG------UCGCCC-CGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 101762 | 0.73 | 0.247494 |
Target: 5'- gCGGcCGCgUCGCGGgGCACGucGCcgGGGGCGg -3' miRNA: 3'- -GCC-GCG-AGCGCUgCGUGU--CG--CCCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 40031 | 0.73 | 0.236458 |
Target: 5'- uGGgGagaGCGuuguuauacGCGCGCGGCGGGGCGg -3' miRNA: 3'- gCCgCgagCGC---------UGCGUGUCGCCCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 94700 | 0.73 | 0.231097 |
Target: 5'- uGGCGCggCGCGAgcucCGCcacgagACGGCGGuGGCGg -3' miRNA: 3'- gCCGCGa-GCGCU----GCG------UGUCGCC-CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 2372 | 0.73 | 0.215626 |
Target: 5'- aCGGCGCggcgguacucgCGCGGCG-GCAGCGGcacGGCGg -3' miRNA: 3'- -GCCGCGa----------GCGCUGCgUGUCGCC---CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 118121 | 0.73 | 0.215626 |
Target: 5'- aGGCGCagcUCGCGGCGCcgGgGGCGGacgcGGCGg -3' miRNA: 3'- gCCGCG---AGCGCUGCG--UgUCGCC----CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 130530 | 0.73 | 0.215626 |
Target: 5'- uGGCGCcgCGCGGCGC-CGcGCuGGGCGu -3' miRNA: 3'- gCCGCGa-GCGCUGCGuGU-CGcCCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 146997 | 0.73 | 0.215626 |
Target: 5'- uGGCgGCUCGCGGcCGCGgGGCcaccGGGGCc -3' miRNA: 3'- gCCG-CGAGCGCU-GCGUgUCG----CCCCGc -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 84391 | 0.73 | 0.215626 |
Target: 5'- cCGGCucGCcCGCGACG-ACGGCaGGGGCGc -3' miRNA: 3'- -GCCG--CGaGCGCUGCgUGUCG-CCCCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 32829 | 0.73 | 0.225318 |
Target: 5'- gGGCGCUCagggccacgcggGCGGCGgGCAGCcccccgggcagagGGGGCa -3' miRNA: 3'- gCCGCGAG------------CGCUGCgUGUCG-------------CCCCGc -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 15275 | 0.73 | 0.225838 |
Target: 5'- gGGCGCggUCGCGGgagccgGCGCGGCGGcGGUGg -3' miRNA: 3'- gCCGCG--AGCGCUg-----CGUGUCGCC-CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 72901 | 0.73 | 0.225838 |
Target: 5'- aGGCGCU-G-GACGCGCuGCGGGaGCGc -3' miRNA: 3'- gCCGCGAgCgCUGCGUGuCGCCC-CGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 99197 | 0.73 | 0.225838 |
Target: 5'- gCGGCGCcugcCGCGACGgaagcgacCGCGGCGGGcuGCGg -3' miRNA: 3'- -GCCGCGa---GCGCUGC--------GUGUCGCCC--CGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 88678 | 0.73 | 0.225838 |
Target: 5'- gCGGCGCgggcugCGCGcCGCGgcCGGCGGcGGCa -3' miRNA: 3'- -GCCGCGa-----GCGCuGCGU--GUCGCC-CCGc -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 3975 | 0.73 | 0.231097 |
Target: 5'- gCGGCGCUgCGCGGCGaCACGcccGCGGcgccguagccGGCGa -3' miRNA: 3'- -GCCGCGA-GCGCUGC-GUGU---CGCC----------CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 4851 | 0.73 | 0.231097 |
Target: 5'- aCGGCGCcggcggcgagguUCGCGuCG-ACGGCGGcGGCGg -3' miRNA: 3'- -GCCGCG------------AGCGCuGCgUGUCGCC-CCGC- -5' |
|||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 2900 | 0.72 | 0.253169 |
Target: 5'- aGGcCGCcgcgCGCGGCGguCcaggcgGGCGGGGCGg -3' miRNA: 3'- gCC-GCGa---GCGCUGCguG------UCGCCCCGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home