miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 120509 0.74 0.18734
Target:  5'- aGGUGgUCGCGGgGC--AGCGGGGCGc -3'
miRNA:   3'- gCCGCgAGCGCUgCGugUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 139337 0.74 0.18734
Target:  5'- gGGCGcCUCgGCGGCccGCGCGGgGGGGCc -3'
miRNA:   3'- gCCGC-GAG-CGCUG--CGUGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 147139 0.74 0.18734
Target:  5'- aGGCGCgcgcgcCGCGGCGcCGCcuCGGGGCGc -3'
miRNA:   3'- gCCGCGa-----GCGCUGC-GUGucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 124749 0.74 0.191816
Target:  5'- uCGGCGCaccgacgacCGCGACGCcgAGgGGGGCGa -3'
miRNA:   3'- -GCCGCGa--------GCGCUGCGugUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 42925 0.74 0.196386
Target:  5'- aCGGCGCcgcgguagCGCGGCGC-CGGCuccagccccgcgGGGGCGu -3'
miRNA:   3'- -GCCGCGa-------GCGCUGCGuGUCG------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57241 0.74 0.196386
Target:  5'- uCGGCGCgcaCGCGGCGC--GGgGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCGCUGCGugUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 74448 0.74 0.19824
Target:  5'- uCGGCGCgCGCGcGCGCGCcaucgaggaccugcuGGCGGaGGCGc -3'
miRNA:   3'- -GCCGCGaGCGC-UGCGUG---------------UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 131145 0.74 0.20105
Target:  5'- gCGcGCGCUCGCcccCGCGCGGCucuGGGCGg -3'
miRNA:   3'- -GC-CGCGAGCGcu-GCGUGUCGc--CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 78038 0.74 0.20105
Target:  5'- uGGCGC-CGUGGCGCGCGGCcccGGagcuGGCGg -3'
miRNA:   3'- gCCGCGaGCGCUGCGUGUCG---CC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 14340 0.74 0.209201
Target:  5'- aGGCGC-CGaCGacgagcgggagagaGCGCAUGGUGGGGCGa -3'
miRNA:   3'- gCCGCGaGC-GC--------------UGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 50387 0.74 0.20969
Target:  5'- uGGCGUUCgacgaggGCGACuacccggGCGCGGCGgGGGCGg -3'
miRNA:   3'- gCCGCGAG-------CGCUG-------CGUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 33359 0.74 0.210669
Target:  5'- gCGGcCGuCUCGCGcC-CGCGGCGGGGCc -3'
miRNA:   3'- -GCC-GC-GAGCGCuGcGUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 95280 0.74 0.210669
Target:  5'- gCGGCGCgcgugcgcuuUCGCGACcugacggcCGCGGCGGGGaCGg -3'
miRNA:   3'- -GCCGCG----------AGCGCUGc-------GUGUCGCCCC-GC- -5'
31167 3' -63.8 NC_006560.1 + 84391 0.73 0.215626
Target:  5'- cCGGCucGCcCGCGACG-ACGGCaGGGGCGc -3'
miRNA:   3'- -GCCG--CGaGCGCUGCgUGUCG-CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 146997 0.73 0.215626
Target:  5'- uGGCgGCUCGCGGcCGCGgGGCcaccGGGGCc -3'
miRNA:   3'- gCCG-CGAGCGCU-GCGUgUCG----CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 130530 0.73 0.215626
Target:  5'- uGGCGCcgCGCGGCGC-CGcGCuGGGCGu -3'
miRNA:   3'- gCCGCGa-GCGCUGCGuGU-CGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118121 0.73 0.215626
Target:  5'- aGGCGCagcUCGCGGCGCcgGgGGCGGacgcGGCGg -3'
miRNA:   3'- gCCGCG---AGCGCUGCG--UgUCGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 2372 0.73 0.215626
Target:  5'- aCGGCGCggcgguacucgCGCGGCG-GCAGCGGcacGGCGg -3'
miRNA:   3'- -GCCGCGa----------GCGCUGCgUGUCGCC---CCGC- -5'
31167 3' -63.8 NC_006560.1 + 32829 0.73 0.225318
Target:  5'- gGGCGCUCagggccacgcggGCGGCGgGCAGCcccccgggcagagGGGGCa -3'
miRNA:   3'- gCCGCGAG------------CGCUGCgUGUCG-------------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 72901 0.73 0.225838
Target:  5'- aGGCGCU-G-GACGCGCuGCGGGaGCGc -3'
miRNA:   3'- gCCGCGAgCgCUGCGUGuCGCCC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.