miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 99197 0.73 0.225838
Target:  5'- gCGGCGCcugcCGCGACGgaagcgacCGCGGCGGGcuGCGg -3'
miRNA:   3'- -GCCGCGa---GCGCUGC--------GUGUCGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 72901 0.73 0.225838
Target:  5'- aGGCGCU-G-GACGCGCuGCGGGaGCGc -3'
miRNA:   3'- gCCGCGAgCgCUGCGUGuCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 15275 0.73 0.225838
Target:  5'- gGGCGCggUCGCGGgagccgGCGCGGCGGcGGUGg -3'
miRNA:   3'- gCCGCG--AGCGCUg-----CGUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 3975 0.73 0.231097
Target:  5'- gCGGCGCUgCGCGGCGaCACGcccGCGGcgccguagccGGCGa -3'
miRNA:   3'- -GCCGCGA-GCGCUGC-GUGU---CGCC----------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 4851 0.73 0.231097
Target:  5'- aCGGCGCcggcggcgagguUCGCGuCG-ACGGCGGcGGCGg -3'
miRNA:   3'- -GCCGCG------------AGCGCuGCgUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 94700 0.73 0.231097
Target:  5'- uGGCGCggCGCGAgcucCGCcacgagACGGCGGuGGCGg -3'
miRNA:   3'- gCCGCGa-GCGCU----GCG------UGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 40031 0.73 0.236458
Target:  5'- uGGgGagaGCGuuguuauacGCGCGCGGCGGGGCGg -3'
miRNA:   3'- gCCgCgagCGC---------UGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 36103 0.73 0.236458
Target:  5'- gCGGgGC-CGCGGCGgGCAcCGGGGCc -3'
miRNA:   3'- -GCCgCGaGCGCUGCgUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 121590 0.73 0.236458
Target:  5'- aGGCGC-CGCGccacggcCGCGaagAGCGGGGCGu -3'
miRNA:   3'- gCCGCGaGCGCu------GCGUg--UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 117668 0.73 0.241924
Target:  5'- uCGGCGUUCGCcGCGUACAugccGCGGGacGCGc -3'
miRNA:   3'- -GCCGCGAGCGcUGCGUGU----CGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 108052 0.73 0.241924
Target:  5'- uCGGCGCgCGCGuCGCucccgacggGCAGUucccGGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCuGCG---------UGUCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 5505 0.73 0.241924
Target:  5'- gCGGCGgUCGCGGCGaggguCGGCGGcGGUc -3'
miRNA:   3'- -GCCGCgAGCGCUGCgu---GUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 126494 0.73 0.244139
Target:  5'- gCGGUGCUCGCGgugguagagguaggcGCGCacGCAGCGGaccGCGg -3'
miRNA:   3'- -GCCGCGAGCGC---------------UGCG--UGUCGCCc--CGC- -5'
31167 3' -63.8 NC_006560.1 + 82255 0.73 0.246932
Target:  5'- gCGGCGgUCGCGucuguccGCGguCGGUGGcGGCGg -3'
miRNA:   3'- -GCCGCgAGCGC-------UGCguGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 101762 0.73 0.247494
Target:  5'- gCGGcCGCgUCGCGGgGCACGucGCcgGGGGCGg -3'
miRNA:   3'- -GCC-GCG-AGCGCUgCGUGU--CG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 94954 0.73 0.247494
Target:  5'- aGGCGCUgCGCcgcgugcuGGCGCGCaucgggGGCGGGcGCGg -3'
miRNA:   3'- gCCGCGA-GCG--------CUGCGUG------UCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 67077 0.73 0.247494
Target:  5'- gCGGgGCUgccCGCGGCGCcagAgAGCGcGGGCGg -3'
miRNA:   3'- -GCCgCGA---GCGCUGCG---UgUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 9593 0.73 0.247494
Target:  5'- aGGCGCggcgagcggagCGCGGgGCGCGGCcccuGGGGCc -3'
miRNA:   3'- gCCGCGa----------GCGCUgCGUGUCG----CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 3496 0.73 0.247494
Target:  5'- uCGGCGUcgGCGGCGUcCAGCagGGGGCGc -3'
miRNA:   3'- -GCCGCGagCGCUGCGuGUCG--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 12550 0.72 0.251456
Target:  5'- cCGGCGC-CGCGcCGUcggggucucgucgaGCAGCuGGGGCa -3'
miRNA:   3'- -GCCGCGaGCGCuGCG--------------UGUCG-CCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.