miRNA display CGI


Results 81 - 100 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 137223 0.72 0.253169
Target:  5'- gGGCGUUCGacuucaaGACGCugGggGCGcGGGCGg -3'
miRNA:   3'- gCCGCGAGCg------CUGCGugU--CGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 101977 0.72 0.253169
Target:  5'- aGGCGCUccagcaggccCGCGAaggaGC-CGGgGGGGCGg -3'
miRNA:   3'- gCCGCGA----------GCGCUg---CGuGUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2900 0.72 0.253169
Target:  5'- aGGcCGCcgcgCGCGGCGguCcaggcgGGCGGGGCGg -3'
miRNA:   3'- gCC-GCGa---GCGCUGCguG------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 40895 0.72 0.257206
Target:  5'- aCGGCGUggccgccgauuacgUCGCGcggcacaGCGCGGCGGGGUc -3'
miRNA:   3'- -GCCGCG--------------AGCGCug-----CGUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 4148 0.72 0.258952
Target:  5'- gCGGCgGCUCaUGGC-CACGGCGGcGGCGg -3'
miRNA:   3'- -GCCG-CGAGcGCUGcGUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 33793 0.72 0.258952
Target:  5'- gGGCGCgcgaagUCGCGG-GCGCGGacggGGGGCGg -3'
miRNA:   3'- gCCGCG------AGCGCUgCGUGUCg---CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 99928 0.72 0.258952
Target:  5'- gGGCGCUcgggCGCGGCGgACGGgaGGGcGCGg -3'
miRNA:   3'- gCCGCGA----GCGCUGCgUGUCg-CCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 147667 0.72 0.264842
Target:  5'- cCGGCGCgcacCGCcuccucggccucGGCGCGCGuGCGGGGUc -3'
miRNA:   3'- -GCCGCGa---GCG------------CUGCGUGU-CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 144350 0.72 0.264842
Target:  5'- gGGCGCgagacggcCGCGGgGCcgcgGCGGCaGGGGCGg -3'
miRNA:   3'- gCCGCGa-------GCGCUgCG----UGUCG-CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 135168 0.72 0.264842
Target:  5'- cCGGUGCgcgGUGGCGUugAGCaGGGCGc -3'
miRNA:   3'- -GCCGCGag-CGCUGCGugUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 39918 0.72 0.27084
Target:  5'- gGuGCGCUCGgGugGCugGGUggcuGGGGCc -3'
miRNA:   3'- gC-CGCGAGCgCugCGugUCG----CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 5084 0.72 0.27084
Target:  5'- cCGGCGU--GCGGCGCGCcgcccggggucGGCGgGGGCGc -3'
miRNA:   3'- -GCCGCGagCGCUGCGUG-----------UCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 23388 0.72 0.276946
Target:  5'- aCGGCGC-CGCGGgcgucgucgcCGCGCAGCGccgccuGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCU----------GCGUGUCGCc-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 129910 0.72 0.276946
Target:  5'- gCGGUGCcUGCGcacGCGCGCGGCcGGaGGCGc -3'
miRNA:   3'- -GCCGCGaGCGC---UGCGUGUCG-CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 27224 0.72 0.276946
Target:  5'- gCGGgGC-CGgGAcCGCGgGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGCgCU-GCGUgUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 95175 0.72 0.276946
Target:  5'- gGGCGCUgCGUG-CGCgaGCAGCGcGGCGa -3'
miRNA:   3'- gCCGCGA-GCGCuGCG--UGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 30564 0.72 0.276946
Target:  5'- gCGGCGC-CGCGGCGCGCGcgccucgcgccGCGGcccGCGu -3'
miRNA:   3'- -GCCGCGaGCGCUGCGUGU-----------CGCCc--CGC- -5'
31167 3' -63.8 NC_006560.1 + 15163 0.72 0.27942
Target:  5'- cCGGCGUcuUCGCGgucgggaucacgggcGuCGCGCccuccGGCGGGGCGg -3'
miRNA:   3'- -GCCGCG--AGCGC---------------U-GCGUG-----UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 22887 0.72 0.282536
Target:  5'- cCGGgGCUCuGgGGCGCGCccgagguGGCGGaGGCGc -3'
miRNA:   3'- -GCCgCGAG-CgCUGCGUG-------UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 78074 0.72 0.283163
Target:  5'- gCGGCGCggcCGCGGCGCucgggggccucgACGGCccccGGGCGc -3'
miRNA:   3'- -GCCGCGa--GCGCUGCG------------UGUCGc---CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.