miRNA display CGI


Results 101 - 120 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 78074 0.72 0.283163
Target:  5'- gCGGCGCggcCGCGGCGCucgggggccucgACGGCccccGGGCGc -3'
miRNA:   3'- -GCCGCGa--GCGCUGCG------------UGUCGc---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 62395 0.71 0.289489
Target:  5'- cCGGUGCUCGaGGggguguccauCGCGaguGGCGGGGCGg -3'
miRNA:   3'- -GCCGCGAGCgCU----------GCGUg--UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 39468 0.71 0.289489
Target:  5'- uCGGCGC-CGcCGGCGCgGCGaCGGGGCc -3'
miRNA:   3'- -GCCGCGaGC-GCUGCG-UGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 21285 0.71 0.289489
Target:  5'- gCGGCGCccucgaCGCGAgGgCGCgAGCGGGcGCGg -3'
miRNA:   3'- -GCCGCGa-----GCGCUgC-GUG-UCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 12696 0.71 0.289489
Target:  5'- uGGCGCcCGUGugGU-CGGCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCugCGuGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 85568 0.71 0.289489
Target:  5'- gGGCgGCUCGgGGgcgggggGCGCGGCGGGcGCGg -3'
miRNA:   3'- gCCG-CGAGCgCUg------CGUGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 5250 0.71 0.289489
Target:  5'- gGGCcaGCUgcCGCGAgGaCGCGGCGGcGGCGg -3'
miRNA:   3'- gCCG--CGA--GCGCUgC-GUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 147975 0.71 0.295925
Target:  5'- uCGGCGUccgUGuCGGCGUcggaGGCGGGGCGg -3'
miRNA:   3'- -GCCGCGa--GC-GCUGCGug--UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 15330 0.71 0.295925
Target:  5'- cCGGUcccGUUCGCGGCcgGCGCGGCcGGGGUc -3'
miRNA:   3'- -GCCG---CGAGCGCUG--CGUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 5769 0.71 0.295925
Target:  5'- gCGGCGCcgCGCGcAgGCGCGGaagcagGGGGCa -3'
miRNA:   3'- -GCCGCGa-GCGC-UgCGUGUCg-----CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 22332 0.71 0.295925
Target:  5'- gCGGaGCUCGCGGaGCucGCGGCGGGGg- -3'
miRNA:   3'- -GCCgCGAGCGCUgCG--UGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 18103 0.71 0.295925
Target:  5'- gGGCGgUCGCGGCGUucuGCGucCGGGGCc -3'
miRNA:   3'- gCCGCgAGCGCUGCG---UGUc-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 93047 0.71 0.295925
Target:  5'- uCGGCgGCuUCGCGGCGCAC-GCGcccGGCGc -3'
miRNA:   3'- -GCCG-CG-AGCGCUGCGUGuCGCc--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 3610 0.71 0.300497
Target:  5'- gCGGCGC-CgGCGacgaggcccacggcGCGCACGGCGGcgacGGCGg -3'
miRNA:   3'- -GCCGCGaG-CGC--------------UGCGUGUCGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 138424 0.71 0.302472
Target:  5'- aCGGCcgggaUCGCGACgGUGguGUGGGGCGa -3'
miRNA:   3'- -GCCGcg---AGCGCUG-CGUguCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 149138 0.71 0.302472
Target:  5'- uGGCuccGC-CGCGGCGCGgGGCggcccccaGGGGCGg -3'
miRNA:   3'- gCCG---CGaGCGCUGCGUgUCG--------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 142089 0.71 0.302472
Target:  5'- gCGGgGC-CGCGGCGCggaggauucccgGCAGCGagccGGGCGu -3'
miRNA:   3'- -GCCgCGaGCGCUGCG------------UGUCGC----CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 73678 0.71 0.302472
Target:  5'- uGGCGCggCGCGGCG-GCccccuGGCGGuGGCGg -3'
miRNA:   3'- gCCGCGa-GCGCUGCgUG-----UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 98431 0.71 0.30846
Target:  5'- aCGGCGCgcCGCuGGCGgGCGGCGGcgaggacGGCGc -3'
miRNA:   3'- -GCCGCGa-GCG-CUGCgUGUCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 102822 0.71 0.309131
Target:  5'- uCGcGCGC-CgGCGACGCG-AGgGGGGCGg -3'
miRNA:   3'- -GC-CGCGaG-CGCUGCGUgUCgCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.