miRNA display CGI


Results 121 - 140 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 43777 0.71 0.309131
Target:  5'- cCGGCGCcguugacCGCGACGguCAGCgccaggaucaggGGGGUGu -3'
miRNA:   3'- -GCCGCGa------GCGCUGCguGUCG------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 102822 0.71 0.309131
Target:  5'- uCGcGCGC-CgGCGACGCG-AGgGGGGCGg -3'
miRNA:   3'- -GC-CGCGaG-CGCUGCGUgUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 21249 0.71 0.309131
Target:  5'- gGGaCGC-CGCGcAgGCGCGGUGaGGGCGg -3'
miRNA:   3'- gCC-GCGaGCGC-UgCGUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 142441 0.71 0.3159
Target:  5'- cCGGCGCg-GCGGcCGCGCGgccccgcagguGCGGcGGCGg -3'
miRNA:   3'- -GCCGCGagCGCU-GCGUGU-----------CGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 133540 0.71 0.3159
Target:  5'- gGGCGgggagccgGCGGCGCGCGGCGuGGCGg -3'
miRNA:   3'- gCCGCgag-----CGCUGCGUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 55412 0.71 0.3159
Target:  5'- -uGUGCUCGCG-CGacaGCGGCaGGGCGg -3'
miRNA:   3'- gcCGCGAGCGCuGCg--UGUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132225 0.71 0.3159
Target:  5'- gCGGUGUUgCGCGGgGCccuGGCGGGGCu -3'
miRNA:   3'- -GCCGCGA-GCGCUgCGug-UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 102770 0.71 0.3159
Target:  5'- cCGGgGCUCGCGGCa-AgGGgGGGGUGg -3'
miRNA:   3'- -GCCgCGAGCGCUGcgUgUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 9097 0.71 0.3159
Target:  5'- aCGGCGgagCGCG-CGCGCGGCGcGcGGCa -3'
miRNA:   3'- -GCCGCga-GCGCuGCGUGUCGC-C-CCGc -5'
31167 3' -63.8 NC_006560.1 + 85749 0.71 0.322088
Target:  5'- aGGCGCUUGUuggcguaGGCGCGCGGgUGGcGGCu -3'
miRNA:   3'- gCCGCGAGCG-------CUGCGUGUC-GCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 1615 0.71 0.322781
Target:  5'- gCGcGCGCUCuGCGGgcuuCGCGCcugucuguGGCGGGGCc -3'
miRNA:   3'- -GC-CGCGAG-CGCU----GCGUG--------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2465 0.71 0.322781
Target:  5'- aGGCGCg-GCGGCgGCGCGuCGGGGUa -3'
miRNA:   3'- gCCGCGagCGCUG-CGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 35932 0.71 0.325564
Target:  5'- gCGGCcgcuCUCGCcGCGCGCcaacgcgggcgcgggGGCGGGGCu -3'
miRNA:   3'- -GCCGc---GAGCGcUGCGUG---------------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 124474 0.71 0.327663
Target:  5'- cCGGCuCUCGCGGCGCGCGGCcgccgccgacccccGGccccucauGGCGu -3'
miRNA:   3'- -GCCGcGAGCGCUGCGUGUCG--------------CC--------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 113445 0.71 0.329773
Target:  5'- aCGGCGCUccugugcgcCGCGGCGCcCGaCGcGGGCGc -3'
miRNA:   3'- -GCCGCGA---------GCGCUGCGuGUcGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 93293 0.71 0.329773
Target:  5'- gGGCGUUCguGCGugGCAacgggGGUGGGGgGa -3'
miRNA:   3'- gCCGCGAG--CGCugCGUg----UCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 75344 0.71 0.329773
Target:  5'- aGGUGgUCGgGGCGaCGCGGCGGcGCGc -3'
miRNA:   3'- gCCGCgAGCgCUGC-GUGUCGCCcCGC- -5'
31167 3' -63.8 NC_006560.1 + 56037 0.71 0.332601
Target:  5'- aGGCGCUgcguggggaagguccCGuCGACcgaGUACAGCGGGGgGu -3'
miRNA:   3'- gCCGCGA---------------GC-GCUG---CGUGUCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 73414 0.7 0.336876
Target:  5'- aCGGCgaGCUCGCGgagcuggaGCGC-CAGCuGcGGGCGa -3'
miRNA:   3'- -GCCG--CGAGCGC--------UGCGuGUCG-C-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 147897 0.7 0.336876
Target:  5'- aCGGCGCagaccUCGCGGgGCGgGgGCGGGGg- -3'
miRNA:   3'- -GCCGCG-----AGCGCUgCGUgU-CGCCCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.