miRNA display CGI


Results 61 - 80 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 100122 0.66 0.557637
Target:  5'- gCGGCGCUCGgccacgaggcuccacCGGuCGCGCAGCaucauguuguucacGGcGGUGg -3'
miRNA:   3'- -GCCGCGAGC---------------GCU-GCGUGUCG--------------CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 148250 0.66 0.556689
Target:  5'- aCGGCgGCUgCG-GACGCGgAguagcGCGGGGCc -3'
miRNA:   3'- -GCCG-CGA-GCgCUGCGUgU-----CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 94450 0.66 0.556689
Target:  5'- gCGGCGCgggCGCG-CGCGCuGCGcGuGCu -3'
miRNA:   3'- -GCCGCGa--GCGCuGCGUGuCGC-CcCGc -5'
31167 3' -63.8 NC_006560.1 + 59021 0.66 0.556689
Target:  5'- cCGGCGCgcuggccgccgCGCagGGCGCcCAGCaGGGaGCGc -3'
miRNA:   3'- -GCCGCGa----------GCG--CUGCGuGUCG-CCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 112822 0.66 0.556689
Target:  5'- aGGCGCUCGCGcagcugguggGCGacuuCACGcuccCGGGGCc -3'
miRNA:   3'- gCCGCGAGCGC----------UGC----GUGUc---GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 4 0.66 0.556689
Target:  5'- -cGCGC-CGCGuuuCcCGGCGGGGCGg -3'
miRNA:   3'- gcCGCGaGCGCugcGuGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57676 0.66 0.556689
Target:  5'- aGGCGCgccCGCcGCGCGUGGgugGGGGCGa -3'
miRNA:   3'- gCCGCGa--GCGcUGCGUGUCg--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 39233 0.66 0.556689
Target:  5'- gGGCGaC-CGCGAgCGCcauCAGCGaGGGgGg -3'
miRNA:   3'- gCCGC-GaGCGCU-GCGu--GUCGC-CCCgC- -5'
31167 3' -63.8 NC_006560.1 + 141759 0.66 0.556689
Target:  5'- -cGCGCcCGCGuugGCGCGCGGCGaGaGCGg -3'
miRNA:   3'- gcCGCGaGCGC---UGCGUGUCGC-CcCGC- -5'
31167 3' -63.8 NC_006560.1 + 134678 0.66 0.556689
Target:  5'- cCGGCGgggUCGCGGacccgccacuCGcCGCGGCGGGGg- -3'
miRNA:   3'- -GCCGCg--AGCGCU----------GC-GUGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 121716 0.66 0.556689
Target:  5'- aGcGCGuCUC-CGGCGgGCAGCccggcgGGGGCGu -3'
miRNA:   3'- gC-CGC-GAGcGCUGCgUGUCG------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 108605 0.66 0.556689
Target:  5'- uGGCGC-CGCG-CGCGCccgcgAGCGacccGGCGa -3'
miRNA:   3'- gCCGCGaGCGCuGCGUG-----UCGCc---CCGC- -5'
31167 3' -63.8 NC_006560.1 + 25108 0.66 0.556689
Target:  5'- aGGCGCacucgcacCGCGccuGCGCGCGcUGGGGCc -3'
miRNA:   3'- gCCGCGa-------GCGC---UGCGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 115058 0.66 0.556689
Target:  5'- cCGaCGC-CGCGGCGCuGCAGCGcugcgagggccGGGUGg -3'
miRNA:   3'- -GCcGCGaGCGCUGCG-UGUCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 74096 0.66 0.553848
Target:  5'- gCGGCcugGCUgGCGuCGCugGGCgacgccgcgggccaGGGGCu -3'
miRNA:   3'- -GCCG---CGAgCGCuGCGugUCG--------------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 143588 0.66 0.547236
Target:  5'- gGGgGUUCGCGA-GCGagaGGCGuGGCGg -3'
miRNA:   3'- gCCgCGAGCGCUgCGUg--UCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 102519 0.66 0.547236
Target:  5'- gCGGCGCUCGaucuccacCGGCaGCuCGGCGGccugcgcgacGGCGu -3'
miRNA:   3'- -GCCGCGAGC--------GCUG-CGuGUCGCC----------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 66915 0.66 0.547236
Target:  5'- uCGGCGC-CGcCGucCGcCGCGGCccccgccccGGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCu-GC-GUGUCG---------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26821 0.66 0.547236
Target:  5'- gGGCGCgcggGgGACGC-CGGggaccCGGGGCGc -3'
miRNA:   3'- gCCGCGag--CgCUGCGuGUC-----GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 105847 0.66 0.547236
Target:  5'- -cGCGCUCGUG-CGCGCGcGCuacGGGCu -3'
miRNA:   3'- gcCGCGAGCGCuGCGUGU-CGc--CCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.