miRNA display CGI


Results 81 - 100 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 143588 0.66 0.547236
Target:  5'- gGGgGUUCGCGA-GCGagaGGCGuGGCGg -3'
miRNA:   3'- gCCgCGAGCGCUgCGUg--UCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 76590 0.66 0.547236
Target:  5'- gGGCGCcUG-GACGCGCucGGCGaGGCGu -3'
miRNA:   3'- gCCGCGaGCgCUGCGUG--UCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 58833 0.66 0.547236
Target:  5'- aGGCGCa-GC--UGCACGuCGGGGCGg -3'
miRNA:   3'- gCCGCGagCGcuGCGUGUcGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 66915 0.66 0.547236
Target:  5'- uCGGCGC-CGcCGucCGcCGCGGCccccgccccGGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCu-GC-GUGUCG---------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 102519 0.66 0.547236
Target:  5'- gCGGCGCUCGaucuccacCGGCaGCuCGGCGGccugcgcgacGGCGu -3'
miRNA:   3'- -GCCGCGAGC--------GCUG-CGuGUCGCC----------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 105847 0.66 0.547236
Target:  5'- -cGCGCUCGUG-CGCGCGcGCuacGGGCu -3'
miRNA:   3'- gcCGCGAGCGCuGCGUGU-CGc--CCCGc -5'
31167 3' -63.8 NC_006560.1 + 5173 0.66 0.546294
Target:  5'- gGGgGCgggcCGCGGCG-ACGGCGGccccgacGGCGg -3'
miRNA:   3'- gCCgCGa---GCGCUGCgUGUCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 64948 0.66 0.546294
Target:  5'- gGGgGCUCGCcGCcgGCGgccucgucccccuCGGCGGGGCc -3'
miRNA:   3'- gCCgCGAGCGcUG--CGU-------------GUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 34571 0.66 0.546294
Target:  5'- gGGgGUgCGCGACGgGgagagacCGGCGGGGgGg -3'
miRNA:   3'- gCCgCGaGCGCUGCgU-------GUCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 40679 0.67 0.541589
Target:  5'- cCGGCGUaguucagcagguacgUCGCgGGCGC-CAccaucuugugcGCGGGGCu -3'
miRNA:   3'- -GCCGCG---------------AGCG-CUGCGuGU-----------CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 88936 0.67 0.537835
Target:  5'- gGGCGCgcuGCGAgGCcCGGCcccgaGGGCGg -3'
miRNA:   3'- gCCGCGag-CGCUgCGuGUCGc----CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26943 0.67 0.537835
Target:  5'- gCGGgGC-CGCGGagGCcggggaaccccACAgGCGGGGCGg -3'
miRNA:   3'- -GCCgCGaGCGCUg-CG-----------UGU-CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 33205 0.67 0.537835
Target:  5'- aGGCgGC-CGCGGgGCAgA-CGGGGCa -3'
miRNA:   3'- gCCG-CGaGCGCUgCGUgUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 5306 0.67 0.537835
Target:  5'- uCGGcCGC-CGCG-UGCgACGGCGGcGGCc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCG-UGUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 34991 0.67 0.537835
Target:  5'- gGGCGcCUCGgGGcCGCGggcCGGCcGGGCGc -3'
miRNA:   3'- gCCGC-GAGCgCU-GCGU---GUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 13427 0.67 0.537835
Target:  5'- uCGGCGcCUCGaggagGACGCuGCGGCaGGcGCGc -3'
miRNA:   3'- -GCCGC-GAGCg----CUGCG-UGUCGcCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 82495 0.67 0.537835
Target:  5'- gCGaGCGCgacaGCaGCGCGCAGuCGGGGa- -3'
miRNA:   3'- -GC-CGCGag--CGcUGCGUGUC-GCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 9059 0.67 0.537835
Target:  5'- gGGCGUcgacCGCcuccaggggGAgGgGCGGCGGGGCGn -3'
miRNA:   3'- gCCGCGa---GCG---------CUgCgUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 143369 0.67 0.537835
Target:  5'- cCGGU-CUCGacccaGGCGUACcGgGGGGCGg -3'
miRNA:   3'- -GCCGcGAGCg----CUGCGUGuCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57397 0.67 0.532221
Target:  5'- aGG-GC-CGCGGCcaGCGCGGCcgccccggcgaccucGGGGCGg -3'
miRNA:   3'- gCCgCGaGCGCUG--CGUGUCG---------------CCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.