miRNA display CGI


Results 101 - 120 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 97356 0.67 0.52849
Target:  5'- gCGGgaGCUCGUccgcgagcaGACGCgGCGGCcggccgGGGGCGa -3'
miRNA:   3'- -GCCg-CGAGCG---------CUGCG-UGUCG------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 55601 0.67 0.52849
Target:  5'- uGGUcgGC-CGCGGCaGCACcGuCGGGGCa -3'
miRNA:   3'- gCCG--CGaGCGCUG-CGUGuC-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 12014 0.67 0.52849
Target:  5'- gGGCGaaggCGaCGGCGUgGCGGCGgGGGCa -3'
miRNA:   3'- gCCGCga--GC-GCUGCG-UGUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 73576 0.67 0.52849
Target:  5'- aGGCcCUCGCGGgGUucGCc-CGGGGCGa -3'
miRNA:   3'- gCCGcGAGCGCUgCG--UGucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 54993 0.67 0.52849
Target:  5'- aGGC-CUCG-GGCGgAUcgagggGGCGGGGCGc -3'
miRNA:   3'- gCCGcGAGCgCUGCgUG------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 1490 0.67 0.52849
Target:  5'- aGGCGC--GCGgcccACGC-CGGCGGGaGCGc -3'
miRNA:   3'- gCCGCGagCGC----UGCGuGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 33857 0.67 0.52849
Target:  5'- gGGCGCgCGCG-CGUguguguauACGGgGGGGgGg -3'
miRNA:   3'- gCCGCGaGCGCuGCG--------UGUCgCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 79817 0.67 0.52849
Target:  5'- gGGCGCg-GUGGCGCcggGCGGCGauuucGGCGg -3'
miRNA:   3'- gCCGCGagCGCUGCG---UGUCGCc----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 77511 0.67 0.52849
Target:  5'- uGGCGCUgaGCGACGCcCA---GGGCGa -3'
miRNA:   3'- gCCGCGAg-CGCUGCGuGUcgcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 53467 0.67 0.52849
Target:  5'- uCGGCGC-CGCccGAgGcCGCGGCGGcGcGCGa -3'
miRNA:   3'- -GCCGCGaGCG--CUgC-GUGUCGCC-C-CGC- -5'
31167 3' -63.8 NC_006560.1 + 22925 0.67 0.527559
Target:  5'- cCGGCGCUacgaggcCGcCGGCGCGCccgccccGUGuGGGCGc -3'
miRNA:   3'- -GCCGCGA-------GC-GCUGCGUGu------CGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 101818 0.67 0.519206
Target:  5'- -aGCGC-CGCGAC-CACGGCGuGGCc -3'
miRNA:   3'- gcCGCGaGCGCUGcGUGUCGCcCCGc -5'
31167 3' -63.8 NC_006560.1 + 125034 0.67 0.519206
Target:  5'- cCGGCgGCUgGUGGCGC--GGCGGucgccGGCGg -3'
miRNA:   3'- -GCCG-CGAgCGCUGCGugUCGCC-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 2195 0.67 0.519206
Target:  5'- cCGGCGCgCGCGGcCGCGCgguccAGCGccagguagacGGGCc -3'
miRNA:   3'- -GCCGCGaGCGCU-GCGUG-----UCGC----------CCCGc -5'
31167 3' -63.8 NC_006560.1 + 74282 0.67 0.519206
Target:  5'- gCGGCGUUCGagcccgccgcCGAccaCGCGgcCGGCGGGGaCGa -3'
miRNA:   3'- -GCCGCGAGC----------GCU---GCGU--GUCGCCCC-GC- -5'
31167 3' -63.8 NC_006560.1 + 7617 0.67 0.519206
Target:  5'- cCGGCGCcCGagaccCGGCGCucuucCGGCcgucGGGGCGa -3'
miRNA:   3'- -GCCGCGaGC-----GCUGCGu----GUCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132895 0.67 0.519206
Target:  5'- gCGGuCGaaggGCGACGUGCGGCGGccgacGGCGg -3'
miRNA:   3'- -GCC-GCgag-CGCUGCGUGUCGCC-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 97239 0.67 0.519206
Target:  5'- cCGGCGCUacaaCGgGACGCACgugaaGGUGGGcCa -3'
miRNA:   3'- -GCCGCGA----GCgCUGCGUG-----UCGCCCcGc -5'
31167 3' -63.8 NC_006560.1 + 77692 0.67 0.519206
Target:  5'- gGGCGCgcucgccccgcUCGCGGaGC-CGGCGGGcGCc -3'
miRNA:   3'- gCCGCG-----------AGCGCUgCGuGUCGCCC-CGc -5'
31167 3' -63.8 NC_006560.1 + 146530 0.67 0.519206
Target:  5'- cCGGCGCgUCGgGggGCGCggGCAGCGaGGCc -3'
miRNA:   3'- -GCCGCG-AGCgC--UGCG--UGUCGCcCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.