miRNA display CGI


Results 61 - 80 of 409 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 12014 0.67 0.52849
Target:  5'- gGGCGaaggCGaCGGCGUgGCGGCGgGGGCa -3'
miRNA:   3'- gCCGCga--GC-GCUGCG-UGUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 12319 0.67 0.49176
Target:  5'- aGGCGCcccaUCGgGGaccggagGCACcucggggcuGGCGGGGCGg -3'
miRNA:   3'- gCCGCG----AGCgCUg------CGUG---------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 12550 0.72 0.251456
Target:  5'- cCGGCGC-CGCGcCGUcggggucucgucgaGCAGCuGGGGCa -3'
miRNA:   3'- -GCCGCGaGCGCuGCG--------------UGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 12696 0.71 0.289489
Target:  5'- uGGCGCcCGUGugGU-CGGCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCugCGuGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 13427 0.67 0.537835
Target:  5'- uCGGCGcCUCGaggagGACGCuGCGGCaGGcGCGc -3'
miRNA:   3'- -GCCGC-GAGCg----CUGCG-UGUCGcCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 14203 0.67 0.500837
Target:  5'- gGGCGUg-GgGugGUcgGGCGGGGCGc -3'
miRNA:   3'- gCCGCGagCgCugCGugUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 14340 0.74 0.209201
Target:  5'- aGGCGC-CGaCGacgagcgggagagaGCGCAUGGUGGGGCGa -3'
miRNA:   3'- gCCGCGaGC-GC--------------UGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 14858 0.68 0.456253
Target:  5'- uGGCgGC-CG-GGCGC-CGGgGGGGCGg -3'
miRNA:   3'- gCCG-CGaGCgCUGCGuGUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 15034 0.65 0.602613
Target:  5'- gCGGCGUcggagacUCGCGccggggggcgacgGCGuCGguGgGGGGCGg -3'
miRNA:   3'- -GCCGCG-------AGCGC-------------UGC-GUguCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 15163 0.72 0.27942
Target:  5'- cCGGCGUcuUCGCGgucgggaucacgggcGuCGCGCccuccGGCGGGGCGg -3'
miRNA:   3'- -GCCGCG--AGCGC---------------U-GCGUG-----UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 15275 0.73 0.225838
Target:  5'- gGGCGCggUCGCGGgagccgGCGCGGCGGcGGUGg -3'
miRNA:   3'- gCCGCG--AGCGCUg-----CGUGUCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 15330 0.71 0.295925
Target:  5'- cCGGUcccGUUCGCGGCcgGCGCGGCcGGGGUc -3'
miRNA:   3'- -GCCG---CGAGCGCUG--CGUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 15471 0.7 0.341914
Target:  5'- aGGgGCUCguccuccugggucgGCGACGCGCu-CGGGGCc -3'
miRNA:   3'- gCCgCGAG--------------CGCUGCGUGucGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 16271 0.77 0.129569
Target:  5'- gCGGCGCgCGCggaGACggccgaccccugggGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCCGCGaGCG---CUG--------------CGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 16536 0.66 0.565236
Target:  5'- gCGGCGCUggggCGCcGCGCGCcaucgaaGGUGaGGGCc -3'
miRNA:   3'- -GCCGCGA----GCGcUGCGUG-------UCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 16599 0.66 0.547236
Target:  5'- aGGUucaGCUUGUaguaGCGCGuccaGGCGGGGCGg -3'
miRNA:   3'- gCCG---CGAGCGc---UGCGUg---UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 17067 0.66 0.575728
Target:  5'- uGGCGCUCagcagcuggcggGCGACcgccgugaccuGCGCgaGGCucagGGGGCGg -3'
miRNA:   3'- gCCGCGAG------------CGCUG-----------CGUG--UCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 17682 0.68 0.439024
Target:  5'- gGGCGC-CGUGGgGCcCGGgGGGGUc -3'
miRNA:   3'- gCCGCGaGCGCUgCGuGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 17969 0.69 0.381022
Target:  5'- gCGGCGCcCGgGGCcccacccGCGCgAGCGGGcGCGu -3'
miRNA:   3'- -GCCGCGaGCgCUG-------CGUG-UCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 18103 0.71 0.295925
Target:  5'- gGGCGgUCGCGGCGUucuGCGucCGGGGCc -3'
miRNA:   3'- gCCGCgAGCGCUGCG---UGUc-GCCCCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.