miRNA display CGI


Results 81 - 100 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 18802 0.68 0.447592
Target:  5'- gGGaCGCcgUCGCGuCGCGCccacGCGGGuGCGu -3'
miRNA:   3'- gCC-GCG--AGCGCuGCGUGu---CGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 18837 0.68 0.482759
Target:  5'- gGGCgGCUcCGCGAgGcCGCgucucgccucugGGCGGGGCc -3'
miRNA:   3'- gCCG-CGA-GCGCUgC-GUG------------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 18923 0.76 0.151046
Target:  5'- cCGGCGUccgugCGCGGCGUGCcgcGCGGGGCc -3'
miRNA:   3'- -GCCGCGa----GCGCUGCGUGu--CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 20894 0.69 0.389669
Target:  5'- uCGGCGCg-GCGuuccCGgGCGGUGGGcGCGg -3'
miRNA:   3'- -GCCGCGagCGCu---GCgUGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 20951 0.7 0.344089
Target:  5'- aCGGCGUUUGCGGCGgGCcGGCcGcGGCGc -3'
miRNA:   3'- -GCCGCGAGCGCUGCgUG-UCGcC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 21249 0.71 0.309131
Target:  5'- gGGaCGC-CGCGcAgGCGCGGUGaGGGCGg -3'
miRNA:   3'- gCC-GCGaGCGC-UgCGUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 21285 0.71 0.289489
Target:  5'- gCGGCGCccucgaCGCGAgGgCGCgAGCGGGcGCGg -3'
miRNA:   3'- -GCCGCGa-----GCGCUgC-GUG-UCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 21697 0.68 0.464124
Target:  5'- gCGGCGC-CGcCGGCcgcccccGCGCccCGGGGCGg -3'
miRNA:   3'- -GCCGCGaGC-GCUG-------CGUGucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 22332 0.71 0.295925
Target:  5'- gCGGaGCUCGCGGaGCucGCGGCGGGGg- -3'
miRNA:   3'- -GCCgCGAGCGCUgCG--UGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 22887 0.72 0.282536
Target:  5'- cCGGgGCUCuGgGGCGCGCccgagguGGCGGaGGCGc -3'
miRNA:   3'- -GCCgCGAG-CgCUGCGUG-------UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 22925 0.67 0.527559
Target:  5'- cCGGCGCUacgaggcCGcCGGCGCGCccgccccGUGuGGGCGc -3'
miRNA:   3'- -GCCGCGA-------GC-GCUGCGUGu------CGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 23388 0.72 0.276946
Target:  5'- aCGGCGC-CGCGGgcgucgucgcCGCGCAGCGccgccuGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCU----------GCGUGUCGCc-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 23544 0.66 0.575728
Target:  5'- aGGCGCUCGuCGA-GgGCuuCGGcGGCGa -3'
miRNA:   3'- gCCGCGAGC-GCUgCgUGucGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 25108 0.66 0.556689
Target:  5'- aGGCGCacucgcacCGCGccuGCGCGCGcUGGGGCc -3'
miRNA:   3'- gCCGCGa-------GCGC---UGCGUGUcGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 25171 0.68 0.456253
Target:  5'- uGGCGCUggaccgCGCGGcCGCGCGcGCcGGGCc -3'
miRNA:   3'- gCCGCGA------GCGCU-GCGUGU-CGcCCCGc -5'
31167 3' -63.8 NC_006560.1 + 25842 0.67 0.509987
Target:  5'- aCGGCGUggcCG-GGCGCGCGccCGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCgCUGCGUGUc-GCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 25914 0.68 0.447592
Target:  5'- gGGCGCgCGC-ACGgGCcGCGGaGGCGu -3'
miRNA:   3'- gCCGCGaGCGcUGCgUGuCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 26008 0.66 0.59491
Target:  5'- gGGCGC-CGUG-CGgGCcGCGGGGg- -3'
miRNA:   3'- gCCGCGaGCGCuGCgUGuCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 26139 0.69 0.39764
Target:  5'- cCGGgGCUgCGUgGGgGCGCGGCaGGGGCc -3'
miRNA:   3'- -GCCgCGA-GCG-CUgCGUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 26271 0.68 0.43055
Target:  5'- gCGGgGCUCGCGcCGC-CGGgGagccuggcGGGCGg -3'
miRNA:   3'- -GCCgCGAGCGCuGCGuGUCgC--------CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.