miRNA display CGI


Results 101 - 120 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 26367 0.66 0.547236
Target:  5'- gCGGgGCggaGaCGGCGCccCGGcCGGGGCGc -3'
miRNA:   3'- -GCCgCGag-C-GCUGCGu-GUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26493 0.66 0.585304
Target:  5'- cCGGCGgggggCG-GGCGCGCgAG-GGGGCGg -3'
miRNA:   3'- -GCCGCga---GCgCUGCGUG-UCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26523 0.68 0.439024
Target:  5'- gGGcCGUggGCGGgCGCGC-GCGGGGCc -3'
miRNA:   3'- gCC-GCGagCGCU-GCGUGuCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 26690 0.7 0.366391
Target:  5'- aCGGgGCcCGCGAcgagccCGCGCcGCGGGcGCGc -3'
miRNA:   3'- -GCCgCGaGCGCU------GCGUGuCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 26821 0.66 0.547236
Target:  5'- gGGCGCgcggGgGACGC-CGGggaccCGGGGCGc -3'
miRNA:   3'- gCCGCGag--CgCUGCGuGUC-----GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 26943 0.67 0.537835
Target:  5'- gCGGgGC-CGCGGagGCcggggaaccccACAgGCGGGGCGg -3'
miRNA:   3'- -GCCgCGaGCGCUg-CG-----------UGU-CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 27106 0.65 0.60165
Target:  5'- gGGC-CUCGCGACccggccuccaccgaGaCGCAGUuGGGGCc -3'
miRNA:   3'- gCCGcGAGCGCUG--------------C-GUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 27178 0.78 0.115137
Target:  5'- gCGGCGCgcgCGCGgaaaaaaACGC-CGGCGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCGC-------UGCGuGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 27224 0.72 0.276946
Target:  5'- gCGGgGC-CGgGAcCGCGgGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGCgCU-GCGUgUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 27284 0.69 0.413894
Target:  5'- gGGgGCggggCGCGGgGCGCGGgGaGGGCc -3'
miRNA:   3'- gCCgCGa---GCGCUgCGUGUCgC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 27400 0.67 0.519206
Target:  5'- gGGCcCUCccgcgGCGGCGCGC-GCGcGGGCc -3'
miRNA:   3'- gCCGcGAG-----CGCUGCGUGuCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 27604 0.78 0.101962
Target:  5'- gGGCGCUCGCGccugcugcccgaGCuCGCGGCGGGcGCGg -3'
miRNA:   3'- gCCGCGAGCGC------------UGcGUGUCGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 27646 0.68 0.465003
Target:  5'- gGGCGCggggCGCGGC-CGCcGCGGaGGUc -3'
miRNA:   3'- gCCGCGa---GCGCUGcGUGuCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 27935 0.66 0.575728
Target:  5'- uGGCGcCUCGCGccccCGCGCccCGGGGg- -3'
miRNA:   3'- gCCGC-GAGCGCu---GCGUGucGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 30564 0.72 0.276946
Target:  5'- gCGGCGC-CGCGGCGCGCGcgccucgcgccGCGGcccGCGu -3'
miRNA:   3'- -GCCGCGaGCGCUGCGUGU-----------CGCCc--CGC- -5'
31167 3' -63.8 NC_006560.1 + 30828 0.66 0.59491
Target:  5'- aGGCcCUgGCccaGGCGCugGGCcGGGCGc -3'
miRNA:   3'- gCCGcGAgCG---CUGCGugUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 31836 0.8 0.083463
Target:  5'- uGGgGCUcgccgCGCGACGCGCGGgGGGGCc -3'
miRNA:   3'- gCCgCGA-----GCGCUGCGUGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 31940 0.69 0.422172
Target:  5'- -aGCGCgCGCGGgGgGCGGCcGGGCGg -3'
miRNA:   3'- gcCGCGaGCGCUgCgUGUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 32107 0.68 0.439024
Target:  5'- gGGCgGCagGCGGgGCAgCgAGCGGGGCc -3'
miRNA:   3'- gCCG-CGagCGCUgCGU-G-UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 32701 0.66 0.59491
Target:  5'- gGGgGCUcCGCccgagGGCGCGCGGgccCGGGGUc -3'
miRNA:   3'- gCCgCGA-GCG-----CUGCGUGUC---GCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.