miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 135168 0.72 0.264842
Target:  5'- cCGGUGCgcgGUGGCGUugAGCaGGGCGc -3'
miRNA:   3'- -GCCGCGag-CGCUGCGugUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 135109 0.68 0.473839
Target:  5'- aGGCGCUCGgGcucgaGC-CGGCG-GGCGg -3'
miRNA:   3'- gCCGCGAGCgCug---CGuGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 135053 0.66 0.585304
Target:  5'- -cGCGCUCggccaccgcgGCGACGU-CGGCgucgGGGGCGc -3'
miRNA:   3'- gcCGCGAG----------CGCUGCGuGUCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 134765 0.77 0.118305
Target:  5'- aGGCGCgcgccagCGCG-CGCAgGGuCGGGGCGg -3'
miRNA:   3'- gCCGCGa------GCGCuGCGUgUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 134678 0.66 0.556689
Target:  5'- cCGGCGgggUCGCGGacccgccacuCGcCGCGGCGGGGg- -3'
miRNA:   3'- -GCCGCg--AGCGCU----------GC-GUGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 134525 0.69 0.389669
Target:  5'- gCGGCGUUgCG-GACGCgGCAGaCGcGGGCGu -3'
miRNA:   3'- -GCCGCGA-GCgCUGCG-UGUC-GC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 133540 0.71 0.3159
Target:  5'- gGGCGgggagccgGCGGCGCGCGGCGuGGCGg -3'
miRNA:   3'- gCCGCgag-----CGCUGCGUGUCGCcCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132895 0.67 0.519206
Target:  5'- gCGGuCGaaggGCGACGUGCGGCGGccgacGGCGg -3'
miRNA:   3'- -GCC-GCgag-CGCUGCGUGUCGCC-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 132319 0.82 0.05563
Target:  5'- gCGGCGCggcCGgGGCGCACGcggucGCGGGGCGg -3'
miRNA:   3'- -GCCGCGa--GCgCUGCGUGU-----CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132225 0.71 0.3159
Target:  5'- gCGGUGUUgCGCGGgGCccuGGCGGGGCu -3'
miRNA:   3'- -GCCGCGA-GCGCUgCGug-UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 132039 0.81 0.064817
Target:  5'- cCGGcCGC-CGCGcUGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131882 0.7 0.374043
Target:  5'- -nGCGgUCGCGGCGUAC-GCGgaGGGCGc -3'
miRNA:   3'- gcCGCgAGCGCUGCGUGuCGC--CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131856 0.82 0.052859
Target:  5'- gCGGCGa-CGCGGCGCGCGcuGCGGGGCGc -3'
miRNA:   3'- -GCCGCgaGCGCUGCGUGU--CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131498 0.67 0.509987
Target:  5'- aCGGCGUcgUCGCGGCcgucgggcugcgGCucgagGCGGCGGccGGCGa -3'
miRNA:   3'- -GCCGCG--AGCGCUG------------CG-----UGUCGCC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 131375 0.67 0.49176
Target:  5'- uGGCGCggGgGGCGCGguGCuggcGGGCGc -3'
miRNA:   3'- gCCGCGagCgCUGCGUguCGc---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131209 0.7 0.374043
Target:  5'- cCGGCGCUgcgccggccCGCGACGC----CGGGGCu -3'
miRNA:   3'- -GCCGCGA---------GCGCUGCGugucGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 131145 0.74 0.20105
Target:  5'- gCGcGCGCUCGCcccCGCGCGGCucuGGGCGg -3'
miRNA:   3'- -GC-CGCGAGCGcu-GCGUGUCGc--CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 130530 0.73 0.215626
Target:  5'- uGGCGCcgCGCGGCGC-CGcGCuGGGCGu -3'
miRNA:   3'- gCCGCGa-GCGCUGCGuGU-CGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 130311 0.7 0.366391
Target:  5'- cCGGCGCg-GUGGCG-GCGGCGcGGGCc -3'
miRNA:   3'- -GCCGCGagCGCUGCgUGUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 130210 0.69 0.422172
Target:  5'- --cUGC-CGCGACGCGC-GCGGGGaCGc -3'
miRNA:   3'- gccGCGaGCGCUGCGUGuCGCCCC-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.