miRNA display CGI


Results 61 - 80 of 409 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 130053 0.68 0.439024
Target:  5'- gCGGCGg-CGCGACG-ACAGCcGaGGCGg -3'
miRNA:   3'- -GCCGCgaGCGCUGCgUGUCGcC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 129910 0.72 0.276946
Target:  5'- gCGGUGCcUGCGcacGCGCGCGGCcGGaGGCGc -3'
miRNA:   3'- -GCCGCGaGCGC---UGCGUGUCG-CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 129597 0.66 0.569999
Target:  5'- gCGGUGCggcgCGUGACGgacgcccuaagcggcCGCcccgccGGCGGGGCc -3'
miRNA:   3'- -GCCGCGa---GCGCUGC---------------GUG------UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 129433 0.68 0.482759
Target:  5'- uGGCGCa-GCGucuGCGCugggacucgGCGGCGGGGgGc -3'
miRNA:   3'- gCCGCGagCGC---UGCG---------UGUCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 128823 0.7 0.366391
Target:  5'- uCGGCGCgCGcCGACGCggccGCGGCGcGGaGCu -3'
miRNA:   3'- -GCCGCGaGC-GCUGCG----UGUCGC-CC-CGc -5'
31167 3' -63.8 NC_006560.1 + 128481 0.67 0.519206
Target:  5'- gGGCGa-CGUGGC-CAC-GUGGGGCGa -3'
miRNA:   3'- gCCGCgaGCGCUGcGUGuCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 128267 0.68 0.476507
Target:  5'- aGGCGCUgCGCGccgaggggggggaggGCcccggggGCGCGcccGCGGGGCGu -3'
miRNA:   3'- gCCGCGA-GCGC---------------UG-------CGUGU---CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 127487 0.68 0.465003
Target:  5'- aCGG-GCUCGCcGCccgcggGCGCGGCGGaGGCc -3'
miRNA:   3'- -GCCgCGAGCGcUG------CGUGUCGCC-CCGc -5'
31167 3' -63.8 NC_006560.1 + 127059 0.69 0.413894
Target:  5'- gGGCGCUgaCGCGAUGCgccaGCAGCaGGacGGUGa -3'
miRNA:   3'- gCCGCGA--GCGCUGCG----UGUCG-CC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 126669 0.68 0.482759
Target:  5'- cCGGCgGC-CGCGAUgGCGCcgacGUGGGGCc -3'
miRNA:   3'- -GCCG-CGaGCGCUG-CGUGu---CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 126494 0.73 0.244139
Target:  5'- gCGGUGCUCGCGgugguagagguaggcGCGCacGCAGCGGaccGCGg -3'
miRNA:   3'- -GCCGCGAGCGC---------------UGCG--UGUCGCCc--CGC- -5'
31167 3' -63.8 NC_006560.1 + 125524 0.68 0.482759
Target:  5'- cCGGcCGCggugCGCGcCGC-CGcCGGGGCGu -3'
miRNA:   3'- -GCC-GCGa---GCGCuGCGuGUcGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 125144 0.77 0.130524
Target:  5'- aGGCGCUCGUGAgCGaucaCGCGGUGuGGGCGg -3'
miRNA:   3'- gCCGCGAGCGCU-GC----GUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 125034 0.67 0.519206
Target:  5'- cCGGCgGCUgGUGGCGC--GGCGGucgccGGCGg -3'
miRNA:   3'- -GCCG-CGAgCGCUGCGugUCGCC-----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 124791 0.66 0.59876
Target:  5'- gCGGCGCUucguguucugcgagcCcgGCGACGCGCccgucGCGGGcGUGc -3'
miRNA:   3'- -GCCGCGA---------------G--CGCUGCGUGu----CGCCC-CGC- -5'
31167 3' -63.8 NC_006560.1 + 124749 0.74 0.191816
Target:  5'- uCGGCGCaccgacgacCGCGACGCcgAGgGGGGCGa -3'
miRNA:   3'- -GCCGCGa--------GCGCUGCGugUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 124474 0.71 0.327663
Target:  5'- cCGGCuCUCGCGGCGCGCGGCcgccgccgacccccGGccccucauGGCGu -3'
miRNA:   3'- -GCCGcGAGCGCUGCGUGUCG--------------CC--------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 124134 0.79 0.085588
Target:  5'- aCGGCG-UCGCGGCGC-CGGCGGGGg- -3'
miRNA:   3'- -GCCGCgAGCGCUGCGuGUCGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 123274 0.66 0.566188
Target:  5'- gGGCaGUUCuGCGuCGCGCAGCcgccgccccGGGGUu -3'
miRNA:   3'- gCCG-CGAG-CGCuGCGUGUCG---------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 121964 0.69 0.39764
Target:  5'- cCGGCGcCUgGCcgaGACGCACcuGCGGGccGCGg -3'
miRNA:   3'- -GCCGC-GAgCG---CUGCGUGu-CGCCC--CGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.