miRNA display CGI


Results 81 - 100 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 121716 0.66 0.556689
Target:  5'- aGcGCGuCUC-CGGCGgGCAGCccggcgGGGGCGu -3'
miRNA:   3'- gC-CGC-GAGcGCUGCgUGUCG------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 121590 0.73 0.236458
Target:  5'- aGGCGC-CGCGccacggcCGCGaagAGCGGGGCGu -3'
miRNA:   3'- gCCGCGaGCGCu------GCGUg--UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 120509 0.74 0.18734
Target:  5'- aGGUGgUCGCGGgGC--AGCGGGGCGc -3'
miRNA:   3'- gCCGCgAGCGCUgCGugUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 119609 0.65 0.603577
Target:  5'- gCGGgGCcCGagggcccCGACG-GCGGCGGGGCc -3'
miRNA:   3'- -GCCgCGaGC-------GCUGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 119182 0.67 0.490856
Target:  5'- aCGGCcacuacGCUUuCGACuacuacaGCAcCGGCGGGGCGa -3'
miRNA:   3'- -GCCG------CGAGcGCUG-------CGU-GUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118569 0.65 0.600686
Target:  5'- cCGGCGCUCG-GucuCGCuggucccGCGGCaccacuacgcgaccGGGGCGc -3'
miRNA:   3'- -GCCGCGAGCgCu--GCG-------UGUCG--------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118366 0.7 0.366391
Target:  5'- gCGGUGCUCGCGGgccuggaGCcccCGG-GGGGCGg -3'
miRNA:   3'- -GCCGCGAGCGCUg------CGu--GUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118302 0.66 0.584345
Target:  5'- gGGCGC-CcUGGCGCACcaGGCGGccgccguGGCGg -3'
miRNA:   3'- gCCGCGaGcGCUGCGUG--UCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 118121 0.73 0.215626
Target:  5'- aGGCGCagcUCGCGGCGCcgGgGGCGGacgcGGCGg -3'
miRNA:   3'- gCCGCG---AGCGCUGCG--UgUCGCC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 118058 0.68 0.481864
Target:  5'- cCGGCGCcgcCGCgGGCGCccccgccgagcucGCGGC-GGGCGa -3'
miRNA:   3'- -GCCGCGa--GCG-CUGCG-------------UGUCGcCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118009 0.77 0.121256
Target:  5'- gCGGCcgagGC-CGCGGCGCACcuggcGGCGGGGCu -3'
miRNA:   3'- -GCCG----CGaGCGCUGCGUG-----UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 117668 0.73 0.241924
Target:  5'- uCGGCGUUCGCcGCGUACAugccGCGGGacGCGc -3'
miRNA:   3'- -GCCGCGAGCGcUGCGUGU----CGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 116642 0.66 0.584345
Target:  5'- gCGGCGCagcgCGCGAUGUcguCGGCGgccgagcccgugaGGGCc -3'
miRNA:   3'- -GCCGCGa---GCGCUGCGu--GUCGC-------------CCCGc -5'
31167 3' -63.8 NC_006560.1 + 116133 0.7 0.351414
Target:  5'- gGGCGaaCGCGugGUGCGcGUGGGGgGu -3'
miRNA:   3'- gCCGCgaGCGCugCGUGU-CGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 115819 0.68 0.428026
Target:  5'- aGGCGCUCGuCGccuggcucgcgcacGcCGCGCAGCuGGGGg- -3'
miRNA:   3'- gCCGCGAGC-GC--------------U-GCGUGUCG-CCCCgc -5'
31167 3' -63.8 NC_006560.1 + 115435 0.78 0.099454
Target:  5'- uCGGCGCUCGCgcgcgagaucGugGCGCGGCuGGuGGCGc -3'
miRNA:   3'- -GCCGCGAGCG----------CugCGUGUCG-CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 115058 0.66 0.556689
Target:  5'- cCGaCGC-CGCGGCGCuGCAGCGcugcgagggccGGGUGg -3'
miRNA:   3'- -GCcGCGaGCGCUGCG-UGUCGC-----------CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 114361 0.67 0.500837
Target:  5'- gGGCGCguaCGCGG-GCgACcGCGaGGGCGa -3'
miRNA:   3'- gCCGCGa--GCGCUgCG-UGuCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 113445 0.71 0.329773
Target:  5'- aCGGCGCUccugugcgcCGCGGCGCcCGaCGcGGGCGc -3'
miRNA:   3'- -GCCGCGA---------GCGCUGCGuGUcGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 112822 0.66 0.556689
Target:  5'- aGGCGCUCGCGcagcugguggGCGacuuCACGcuccCGGGGCc -3'
miRNA:   3'- gCCGCGAGCGC----------UGC----GUGUc---GCCCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.