miRNA display CGI


Results 41 - 60 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 31836 0.8 0.083463
Target:  5'- uGGgGCUcgccgCGCGACGCGCGGgGGGGCc -3'
miRNA:   3'- gCCgCGA-----GCGCUGCGUGUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 105031 0.8 0.073575
Target:  5'- gGGCGCUcCGCGGCGcCGCcGCGGGGgGg -3'
miRNA:   3'- gCCGCGA-GCGCUGC-GUGuCGCCCCgC- -5'
31167 3' -63.8 NC_006560.1 + 132039 0.81 0.064817
Target:  5'- cCGGcCGC-CGCGcUGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 132319 0.82 0.05563
Target:  5'- gCGGCGCggcCGgGGCGCACGcggucGCGGGGCGg -3'
miRNA:   3'- -GCCGCGa--GCgCUGCGUGU-----CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 131856 0.82 0.052859
Target:  5'- gCGGCGa-CGCGGCGCGCGcuGCGGGGCGc -3'
miRNA:   3'- -GCCGCgaGCGCUGCGUGU--CGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 27178 0.78 0.115137
Target:  5'- gCGGCGCgcgCGCGgaaaaaaACGC-CGGCGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCGC-------UGCGuGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 102861 0.78 0.115421
Target:  5'- uGGCGagcCG-GGCGCGCGGCGGGGUGg -3'
miRNA:   3'- gCCGCga-GCgCUGCGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 18923 0.76 0.151046
Target:  5'- cCGGCGUccgugCGCGGCGUGCcgcGCGGGGCc -3'
miRNA:   3'- -GCCGCGa----GCGCUGCGUGu--CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2558 0.76 0.143899
Target:  5'- aCGGCGCggCGCaggucGCGCGCGGCGGGccaGCGg -3'
miRNA:   3'- -GCCGCGa-GCGc----UGCGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 57847 0.77 0.133756
Target:  5'- gCGGCGCaCGCGAgCGgGCGGCaGGGGCu -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 4068 0.77 0.133756
Target:  5'- gCGGCGUucUCGCG-CGC-CAGCaGGGGCGc -3'
miRNA:   3'- -GCCGCG--AGCGCuGCGuGUCG-CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 2061 0.77 0.133756
Target:  5'- -aGCGCacgCGCGGCGCgGCGGCGGGGUc -3'
miRNA:   3'- gcCGCGa--GCGCUGCG-UGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 125144 0.77 0.130524
Target:  5'- aGGCGCUCGUGAgCGaucaCGCGGUGuGGGCGg -3'
miRNA:   3'- gCCGCGAGCGCU-GC----GUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 16271 0.77 0.129569
Target:  5'- gCGGCGCgCGCggaGACggccgaccccugggGCGCGGCGGGGCGc -3'
miRNA:   3'- -GCCGCGaGCG---CUG--------------CGUGUCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 82782 0.77 0.127364
Target:  5'- cCGGCGCccgcgCGCgGGCGCGCGGgagGGGGCGg -3'
miRNA:   3'- -GCCGCGa----GCG-CUGCGUGUCg--CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 118009 0.77 0.121256
Target:  5'- gCGGCcgagGC-CGCGGCGCACcuggcGGCGGGGCu -3'
miRNA:   3'- -GCCG----CGaGCGCUGCGUG-----UCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 8924 0.77 0.121256
Target:  5'- cCGGCGCggggCGCGGggggcuuuuaUGCGCcGCGGGGCGc -3'
miRNA:   3'- -GCCGCGa---GCGCU----------GCGUGuCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 85245 0.77 0.118305
Target:  5'- cCGGCGCcCGCGGCGCggaagccggcGCuGCGGaGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCUGCG----------UGuCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 134765 0.77 0.118305
Target:  5'- aGGCGCgcgccagCGCG-CGCAgGGuCGGGGCGg -3'
miRNA:   3'- gCCGCGa------GCGCuGCGUgUC-GCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 54947 0.78 0.115421
Target:  5'- uCGGgGCUCGCG-CGCcgGCGGCGGGGg- -3'
miRNA:   3'- -GCCgCGAGCGCuGCG--UGUCGCCCCgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.