Results 61 - 80 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 8924 | 0.77 | 0.121256 |
Target: 5'- cCGGCGCggggCGCGGggggcuuuuaUGCGCcGCGGGGCGc -3' miRNA: 3'- -GCCGCGa---GCGCU----------GCGUGuCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 118009 | 0.77 | 0.121256 |
Target: 5'- gCGGCcgagGC-CGCGGCGCACcuggcGGCGGGGCu -3' miRNA: 3'- -GCCG----CGaGCGCUGCGUG-----UCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 35269 | 0.76 | 0.15474 |
Target: 5'- gCGGcCGC-CGCGcCGgGCGGCGGGGCc -3' miRNA: 3'- -GCC-GCGaGCGCuGCgUGUCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 9863 | 0.75 | 0.162373 |
Target: 5'- gCGGCGUcCGUGGgGCAcCGGgGGGGCGg -3' miRNA: 3'- -GCCGCGaGCGCUgCGU-GUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 43856 | 0.75 | 0.162373 |
Target: 5'- gGGCGaCgugCGcCGGCGC-CAGCGGGGCc -3' miRNA: 3'- gCCGC-Ga--GC-GCUGCGuGUCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 83652 | 0.75 | 0.162373 |
Target: 5'- uGGCGCgggCGUggGACGCGCAgagcgcggcGCGGGGCu -3' miRNA: 3'- gCCGCGa--GCG--CUGCGUGU---------CGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 137160 | 0.75 | 0.174459 |
Target: 5'- uGGCGCUCGgGGCGgAgGGCGcggaGGGCGc -3' miRNA: 3'- gCCGCGAGCgCUGCgUgUCGC----CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 3940 | 0.75 | 0.174459 |
Target: 5'- gCGGCGC-CGCGGuCG-GCGGCGaGGGCGg -3' miRNA: 3'- -GCCGCGaGCGCU-GCgUGUCGC-CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 34633 | 0.75 | 0.174459 |
Target: 5'- gGGCGCggaggUCGCaccgggGACGCGCGGCGgccGGGCGg -3' miRNA: 3'- gCCGCG-----AGCG------CUGCGUGUCGC---CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 140457 | 0.75 | 0.174459 |
Target: 5'- uCGGgGCUUGCGAuCGCGgcgggcCGGgGGGGCGg -3' miRNA: 3'- -GCCgCGAGCGCU-GCGU------GUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 51864 | 0.76 | 0.15474 |
Target: 5'- gGGCGCggCGCGucCGCGCucgggccccgGGCGGGGUGg -3' miRNA: 3'- gCCGCGa-GCGCu-GCGUG----------UCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 47162 | 0.76 | 0.15474 |
Target: 5'- aGGCGCcgagcUCGCGAgGCGCgAGgGGGGCc -3' miRNA: 3'- gCCGCG-----AGCGCUgCGUG-UCgCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 82782 | 0.77 | 0.127364 |
Target: 5'- cCGGCGCccgcgCGCgGGCGCGCGGgagGGGGCGg -3' miRNA: 3'- -GCCGCGa----GCG-CUGCGUGUCg--CCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 16271 | 0.77 | 0.129569 |
Target: 5'- gCGGCGCgCGCggaGACggccgaccccugggGCGCGGCGGGGCGc -3' miRNA: 3'- -GCCGCGaGCG---CUG--------------CGUGUCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 125144 | 0.77 | 0.130524 |
Target: 5'- aGGCGCUCGUGAgCGaucaCGCGGUGuGGGCGg -3' miRNA: 3'- gCCGCGAGCGCU-GC----GUGUCGC-CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 2061 | 0.77 | 0.133756 |
Target: 5'- -aGCGCacgCGCGGCGCgGCGGCGGGGUc -3' miRNA: 3'- gcCGCGa--GCGCUGCG-UGUCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 4068 | 0.77 | 0.133756 |
Target: 5'- gCGGCGUucUCGCG-CGC-CAGCaGGGGCGc -3' miRNA: 3'- -GCCGCG--AGCGCuGCGuGUCG-CCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 57847 | 0.77 | 0.133756 |
Target: 5'- gCGGCGCaCGCGAgCGgGCGGCaGGGGCu -3' miRNA: 3'- -GCCGCGaGCGCU-GCgUGUCG-CCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 2558 | 0.76 | 0.143899 |
Target: 5'- aCGGCGCggCGCaggucGCGCGCGGCGGGccaGCGg -3' miRNA: 3'- -GCCGCGa-GCGc----UGCGUGUCGCCC---CGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 18923 | 0.76 | 0.151046 |
Target: 5'- cCGGCGUccgugCGCGGCGUGCcgcGCGGGGCc -3' miRNA: 3'- -GCCGCGa----GCGCUGCGUGu--CGCCCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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