miRNA display CGI


Results 81 - 100 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 147139 0.74 0.18734
Target:  5'- aGGCGCgcgcgcCGCGGCGcCGCcuCGGGGCGc -3'
miRNA:   3'- gCCGCGa-----GCGCUGC-GUGucGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 124749 0.74 0.191816
Target:  5'- uCGGCGCaccgacgacCGCGACGCcgAGgGGGGCGa -3'
miRNA:   3'- -GCCGCGa--------GCGCUGCGugUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 42925 0.74 0.196386
Target:  5'- aCGGCGCcgcgguagCGCGGCGC-CGGCuccagccccgcgGGGGCGu -3'
miRNA:   3'- -GCCGCGa-------GCGCUGCGuGUCG------------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57241 0.74 0.196386
Target:  5'- uCGGCGCgcaCGCGGCGC--GGgGGGGCc -3'
miRNA:   3'- -GCCGCGa--GCGCUGCGugUCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 74448 0.74 0.19824
Target:  5'- uCGGCGCgCGCGcGCGCGCcaucgaggaccugcuGGCGGaGGCGc -3'
miRNA:   3'- -GCCGCGaGCGC-UGCGUG---------------UCGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 131145 0.74 0.20105
Target:  5'- gCGcGCGCUCGCcccCGCGCGGCucuGGGCGg -3'
miRNA:   3'- -GC-CGCGAGCGcu-GCGUGUCGc--CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 78038 0.74 0.20105
Target:  5'- uGGCGC-CGUGGCGCGCGGCcccGGagcuGGCGg -3'
miRNA:   3'- gCCGCGaGCGCUGCGUGUCG---CC----CCGC- -5'
31167 3' -63.8 NC_006560.1 + 140457 0.75 0.174459
Target:  5'- uCGGgGCUUGCGAuCGCGgcgggcCGGgGGGGCGg -3'
miRNA:   3'- -GCCgCGAGCGCU-GCGU------GUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 34633 0.75 0.174459
Target:  5'- gGGCGCggaggUCGCaccgggGACGCGCGGCGgccGGGCGg -3'
miRNA:   3'- gCCGCG-----AGCG------CUGCGUGUCGC---CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 3940 0.75 0.174459
Target:  5'- gCGGCGC-CGCGGuCG-GCGGCGaGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57847 0.77 0.133756
Target:  5'- gCGGCGCaCGCGAgCGgGCGGCaGGGGCu -3'
miRNA:   3'- -GCCGCGaGCGCU-GCgUGUCG-CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 2558 0.76 0.143899
Target:  5'- aCGGCGCggCGCaggucGCGCGCGGCGGGccaGCGg -3'
miRNA:   3'- -GCCGCGa-GCGc----UGCGUGUCGCCC---CGC- -5'
31167 3' -63.8 NC_006560.1 + 18923 0.76 0.151046
Target:  5'- cCGGCGUccgugCGCGGCGUGCcgcGCGGGGCc -3'
miRNA:   3'- -GCCGCGa----GCGCUGCGUGu--CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 47162 0.76 0.15474
Target:  5'- aGGCGCcgagcUCGCGAgGCGCgAGgGGGGCc -3'
miRNA:   3'- gCCGCG-----AGCGCUgCGUG-UCgCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 51864 0.76 0.15474
Target:  5'- gGGCGCggCGCGucCGCGCucgggccccgGGCGGGGUGg -3'
miRNA:   3'- gCCGCGa-GCGCu-GCGUG----------UCGCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 35269 0.76 0.15474
Target:  5'- gCGGcCGC-CGCGcCGgGCGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGaGCGCuGCgUGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 9863 0.75 0.162373
Target:  5'- gCGGCGUcCGUGGgGCAcCGGgGGGGCGg -3'
miRNA:   3'- -GCCGCGaGCGCUgCGU-GUCgCCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 43856 0.75 0.162373
Target:  5'- gGGCGaCgugCGcCGGCGC-CAGCGGGGCc -3'
miRNA:   3'- gCCGC-Ga--GC-GCUGCGuGUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 83652 0.75 0.162373
Target:  5'- uGGCGCgggCGUggGACGCGCAgagcgcggcGCGGGGCu -3'
miRNA:   3'- gCCGCGa--GCG--CUGCGUGU---------CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 137160 0.75 0.174459
Target:  5'- uGGCGCUCGgGGCGgAgGGCGcggaGGGCGc -3'
miRNA:   3'- gCCGCGAGCgCUGCgUgUCGC----CCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.