Results 121 - 140 of 409 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31167 | 3' | -63.8 | NC_006560.1 | + | 36103 | 0.73 | 0.236458 |
Target: 5'- gCGGgGC-CGCGGCGgGCAcCGGGGCc -3' miRNA: 3'- -GCCgCGaGCGCUGCgUGUcGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 121590 | 0.73 | 0.236458 |
Target: 5'- aGGCGC-CGCGccacggcCGCGaagAGCGGGGCGu -3' miRNA: 3'- gCCGCGaGCGCu------GCGUg--UCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 2372 | 0.73 | 0.215626 |
Target: 5'- aCGGCGCggcgguacucgCGCGGCG-GCAGCGGcacGGCGg -3' miRNA: 3'- -GCCGCGa----------GCGCUGCgUGUCGCC---CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 95280 | 0.74 | 0.210669 |
Target: 5'- gCGGCGCgcgugcgcuuUCGCGACcugacggcCGCGGCGGGGaCGg -3' miRNA: 3'- -GCCGCG----------AGCGCUGc-------GUGUCGCCCC-GC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 33359 | 0.74 | 0.210669 |
Target: 5'- gCGGcCGuCUCGCGcC-CGCGGCGGGGCc -3' miRNA: 3'- -GCC-GC-GAGCGCuGcGUGUCGCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 3940 | 0.75 | 0.174459 |
Target: 5'- gCGGCGC-CGCGGuCG-GCGGCGaGGGCGg -3' miRNA: 3'- -GCCGCGaGCGCU-GCgUGUCGC-CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 34633 | 0.75 | 0.174459 |
Target: 5'- gGGCGCggaggUCGCaccgggGACGCGCGGCGgccGGGCGg -3' miRNA: 3'- gCCGCG-----AGCG------CUGCGUGUCGC---CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 140457 | 0.75 | 0.174459 |
Target: 5'- uCGGgGCUUGCGAuCGCGgcgggcCGGgGGGGCGg -3' miRNA: 3'- -GCCgCGAGCGCU-GCGU------GUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 99595 | 0.75 | 0.182955 |
Target: 5'- cCGGCGCUUcccCGGCGCgGCGG-GGGGCGg -3' miRNA: 3'- -GCCGCGAGc--GCUGCG-UGUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 120509 | 0.74 | 0.18734 |
Target: 5'- aGGUGgUCGCGGgGC--AGCGGGGCGc -3' miRNA: 3'- gCCGCgAGCGCUgCGugUCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 139337 | 0.74 | 0.18734 |
Target: 5'- gGGCGcCUCgGCGGCccGCGCGGgGGGGCc -3' miRNA: 3'- gCCGC-GAG-CGCUG--CGUGUCgCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 147139 | 0.74 | 0.18734 |
Target: 5'- aGGCGCgcgcgcCGCGGCGcCGCcuCGGGGCGc -3' miRNA: 3'- gCCGCGa-----GCGCUGC-GUGucGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 124749 | 0.74 | 0.191816 |
Target: 5'- uCGGCGCaccgacgacCGCGACGCcgAGgGGGGCGa -3' miRNA: 3'- -GCCGCGa--------GCGCUGCGugUCgCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 42925 | 0.74 | 0.196386 |
Target: 5'- aCGGCGCcgcgguagCGCGGCGC-CGGCuccagccccgcgGGGGCGu -3' miRNA: 3'- -GCCGCGa-------GCGCUGCGuGUCG------------CCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 57241 | 0.74 | 0.196386 |
Target: 5'- uCGGCGCgcaCGCGGCGC--GGgGGGGCc -3' miRNA: 3'- -GCCGCGa--GCGCUGCGugUCgCCCCGc -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 74448 | 0.74 | 0.19824 |
Target: 5'- uCGGCGCgCGCGcGCGCGCcaucgaggaccugcuGGCGGaGGCGc -3' miRNA: 3'- -GCCGCGaGCGC-UGCGUG---------------UCGCC-CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 131145 | 0.74 | 0.20105 |
Target: 5'- gCGcGCGCUCGCcccCGCGCGGCucuGGGCGg -3' miRNA: 3'- -GC-CGCGAGCGcu-GCGUGUCGc--CCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 78038 | 0.74 | 0.20105 |
Target: 5'- uGGCGC-CGUGGCGCGCGGCcccGGagcuGGCGg -3' miRNA: 3'- gCCGCGaGCGCUGCGUGUCG---CC----CCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 14340 | 0.74 | 0.209201 |
Target: 5'- aGGCGC-CGaCGacgagcgggagagaGCGCAUGGUGGGGCGa -3' miRNA: 3'- gCCGCGaGC-GC--------------UGCGUGUCGCCCCGC- -5' |
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31167 | 3' | -63.8 | NC_006560.1 | + | 50387 | 0.74 | 0.20969 |
Target: 5'- uGGCGUUCgacgaggGCGACuacccggGCGCGGCGgGGGCGg -3' miRNA: 3'- gCCGCGAG-------CGCUG-------CGUGUCGC-CCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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