miRNA display CGI


Results 21 - 40 of 409 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 3' -63.8 NC_006560.1 + 142942 0.66 0.585304
Target:  5'- gGGCgacccucgaGCUCGCGAgGCGacGCGcGGGCc -3'
miRNA:   3'- gCCG---------CGAGCGCUgCGUguCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 113 0.66 0.585304
Target:  5'- gCGGcCGCggccggCGCGGguUugGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGa-----GCGCUgcGugUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 3559 0.66 0.585304
Target:  5'- gCGGCGC-CGaCGgaGCGCACcugccGCGGGcuGCGg -3'
miRNA:   3'- -GCCGCGaGC-GC--UGCGUGu----CGCCC--CGC- -5'
31167 3' -63.8 NC_006560.1 + 82055 0.66 0.585304
Target:  5'- aGGCcCUCGaagGAgucCGCGCGGCGGucGGCGu -3'
miRNA:   3'- gCCGcGAGCg--CU---GCGUGUCGCC--CCGC- -5'
31167 3' -63.8 NC_006560.1 + 108748 0.66 0.585304
Target:  5'- aGGCGCUCcagggaGACGgGCAGCcgcgGGaGGUGg -3'
miRNA:   3'- gCCGCGAGcg----CUGCgUGUCG----CC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 100800 0.66 0.585304
Target:  5'- uCGGgGC-CGuCGGCGggggcCAUAGCGcGGGCGc -3'
miRNA:   3'- -GCCgCGaGC-GCUGC-----GUGUCGC-CCCGC- -5'
31167 3' -63.8 NC_006560.1 + 150442 0.66 0.585304
Target:  5'- gCGGcCGCggccggCGCGGguUugGGCGGGGCc -3'
miRNA:   3'- -GCC-GCGa-----GCGCUgcGugUCGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 116642 0.66 0.584345
Target:  5'- gCGGCGCagcgCGCGAUGUcguCGGCGgccgagcccgugaGGGCc -3'
miRNA:   3'- -GCCGCGa---GCGCUGCGu--GUCGC-------------CCCGc -5'
31167 3' -63.8 NC_006560.1 + 118302 0.66 0.584345
Target:  5'- gGGCGC-CcUGGCGCACcaGGCGGccgccguGGCGg -3'
miRNA:   3'- gCCGCGaGcGCUGCGUG--UCGCC-------CCGC- -5'
31167 3' -63.8 NC_006560.1 + 5139 0.66 0.584345
Target:  5'- --cCGaCUCGCGGCGCGgGGCccgggccGGGGCc -3'
miRNA:   3'- gccGC-GAGCGCUGCGUgUCG-------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 81193 0.66 0.584345
Target:  5'- uGGCGCgggugggggCGCGACgGCgaccgggaggaggACGGCggcggaggGGGGCGa -3'
miRNA:   3'- gCCGCGa--------GCGCUG-CG-------------UGUCG--------CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 57472 0.66 0.583386
Target:  5'- cCGGCGaugacgccgagCGCGACGagaaACAGCgaccggGGGGCc -3'
miRNA:   3'- -GCCGCga---------GCGCUGCg---UGUCG------CCCCGc -5'
31167 3' -63.8 NC_006560.1 + 23544 0.66 0.575728
Target:  5'- aGGCGCUCGuCGA-GgGCuuCGGcGGCGa -3'
miRNA:   3'- gCCGCGAGC-GCUgCgUGucGCC-CCGC- -5'
31167 3' -63.8 NC_006560.1 + 45763 0.66 0.575728
Target:  5'- aGGgGUUgGCGugGgGgGGCGcGGGCu -3'
miRNA:   3'- gCCgCGAgCGCugCgUgUCGC-CCCGc -5'
31167 3' -63.8 NC_006560.1 + 32890 0.66 0.575728
Target:  5'- aGGcCGCgggGgGGCGCGCccGCGGGGUa -3'
miRNA:   3'- gCC-GCGag-CgCUGCGUGu-CGCCCCGc -5'
31167 3' -63.8 NC_006560.1 + 86384 0.66 0.575728
Target:  5'- aCGGUgGC-CGCGACGUggaGGCaGGGCa -3'
miRNA:   3'- -GCCG-CGaGCGCUGCGug-UCGcCCCGc -5'
31167 3' -63.8 NC_006560.1 + 17067 0.66 0.575728
Target:  5'- uGGCGCUCagcagcuggcggGCGACcgccgugaccuGCGCgaGGCucagGGGGCGg -3'
miRNA:   3'- gCCGCGAG------------CGCUG-----------CGUG--UCG----CCCCGC- -5'
31167 3' -63.8 NC_006560.1 + 27935 0.66 0.575728
Target:  5'- uGGCGcCUCGCGccccCGCGCccCGGGGg- -3'
miRNA:   3'- gCCGC-GAGCGCu---GCGUGucGCCCCgc -5'
31167 3' -63.8 NC_006560.1 + 50957 0.66 0.575728
Target:  5'- cCGGgGaCUCGCGGCGCccCAGaCcGGGCc -3'
miRNA:   3'- -GCCgC-GAGCGCUGCGu-GUC-GcCCCGc -5'
31167 3' -63.8 NC_006560.1 + 42817 0.66 0.575728
Target:  5'- -cGCGCccccgucucccUCGcCGGCcUugGGCGGGGCGg -3'
miRNA:   3'- gcCGCG-----------AGC-GCUGcGugUCGCCCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.