miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31167 5' -53.6 NC_006560.1 + 22182 0.66 0.969458
Target:  5'- cUgUCCCCGccGU-CGgggcCGCCGUCGCc -3'
miRNA:   3'- cAgAGGGGCauCAuGUa---GCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 50533 0.68 0.928092
Target:  5'- aUCUCCgCGUgggacgagucGGUGCAcgcCGCCAUgGCc -3'
miRNA:   3'- cAGAGGgGCA----------UCAUGUa--GCGGUAgCG- -5'
31167 5' -53.6 NC_006560.1 + 71296 0.67 0.93279
Target:  5'- cUCUCCaucgcguCCGUGGUccGCGUCG-UGUCGCg -3'
miRNA:   3'- cAGAGG-------GGCAUCA--UGUAGCgGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 41513 0.67 0.935315
Target:  5'- cGUCUCCCCcacucccaGUCGCgCGUCGUa -3'
miRNA:   3'- -CAGAGGGGcaucaug-UAGCG-GUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 78797 0.67 0.938264
Target:  5'- uGUC-CCCCGgcGUGgAgguucUCGCCGggcUCGCc -3'
miRNA:   3'- -CAGaGGGGCauCAUgU-----AGCGGU---AGCG- -5'
31167 5' -53.6 NC_006560.1 + 115805 0.67 0.938264
Target:  5'- -cCUgCCCGU-GUACGaggCGCuCGUCGCc -3'
miRNA:   3'- caGAgGGGCAuCAUGUa--GCG-GUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 6049 0.67 0.942524
Target:  5'- -cCUCUCUGUGGagccucguuaGCAUCGCCGcgcccgcUCGCg -3'
miRNA:   3'- caGAGGGGCAUCa---------UGUAGCGGU-------AGCG- -5'
31167 5' -53.6 NC_006560.1 + 119411 0.67 0.942985
Target:  5'- gGUCuUCCCCGgcG-GCuUCGCguUCGCc -3'
miRNA:   3'- -CAG-AGGGGCauCaUGuAGCGguAGCG- -5'
31167 5' -53.6 NC_006560.1 + 96055 0.67 0.942985
Target:  5'- -cCUCCCCGUccu-CcUCGCCcUCGCc -3'
miRNA:   3'- caGAGGGGCAucauGuAGCGGuAGCG- -5'
31167 5' -53.6 NC_006560.1 + 58984 0.68 0.928092
Target:  5'- cGUCUCCCCGg---AgAUCGUCAUgucgaUGCg -3'
miRNA:   3'- -CAGAGGGGCaucaUgUAGCGGUA-----GCG- -5'
31167 5' -53.6 NC_006560.1 + 95973 0.68 0.910997
Target:  5'- aGUCgacgCCCgCGUAGUcgcccGCGUagcCGCCcgCGCg -3'
miRNA:   3'- -CAGa---GGG-GCAUCA-----UGUA---GCGGuaGCG- -5'
31167 5' -53.6 NC_006560.1 + 66557 0.69 0.898388
Target:  5'- -cCUCCCUGgcGU-CGUaCGCCGgggCGCa -3'
miRNA:   3'- caGAGGGGCauCAuGUA-GCGGUa--GCG- -5'
31167 5' -53.6 NC_006560.1 + 147497 0.74 0.635917
Target:  5'- cGUCgcugUCCUCGgcGU-CGUCGCCGUCGUc -3'
miRNA:   3'- -CAG----AGGGGCauCAuGUAGCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 39045 0.71 0.776584
Target:  5'- cGUC-CCgCCGaaggggUGGUGCAUCGCCGcggCGCu -3'
miRNA:   3'- -CAGaGG-GGC------AUCAUGUAGCGGUa--GCG- -5'
31167 5' -53.6 NC_006560.1 + 120309 0.7 0.821889
Target:  5'- gGUCaacgCCCUGUGGgACucggcCGCCGUCGCc -3'
miRNA:   3'- -CAGa---GGGGCAUCaUGua---GCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 62637 0.7 0.821889
Target:  5'- -cCUCUCCGUGacGUACAgCGUCAUCGa -3'
miRNA:   3'- caGAGGGGCAU--CAUGUaGCGGUAGCg -5'
31167 5' -53.6 NC_006560.1 + 128093 0.7 0.838834
Target:  5'- cGUgUCCCCGgau--CAUCGCCAUggaCGCc -3'
miRNA:   3'- -CAgAGGGGCaucauGUAGCGGUA---GCG- -5'
31167 5' -53.6 NC_006560.1 + 148006 0.69 0.884831
Target:  5'- gGUCgcggcCCCCGUcGU-CGUCGUCGUCGa -3'
miRNA:   3'- -CAGa----GGGGCAuCAuGUAGCGGUAGCg -5'
31167 5' -53.6 NC_006560.1 + 111125 0.69 0.891726
Target:  5'- uUCUCCCUGgccacCGagGCCAUCGCc -3'
miRNA:   3'- cAGAGGGGCaucauGUagCGGUAGCG- -5'
31167 5' -53.6 NC_006560.1 + 99528 0.69 0.898388
Target:  5'- -cCUCUCCGgggUAGUagGCggCGUCGUCGCg -3'
miRNA:   3'- caGAGGGGC---AUCA--UGuaGCGGUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.